Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.24■□□□□ 0.03
VMP1Q96GC9 AL596087.1-201ENST00000400979 1969 ntBASIC15.24■□□□□ 0.03
VMP1Q96GC9 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VMP1Q96GC9 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 AC023157.3-201ENST00000619086 2088 ntBASIC15.23■□□□□ 0.03
VMP1Q96GC9 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.23■□□□□ 0.03
VMP1Q96GC9 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 FAM220BP-201ENST00000377689 816 ntBASIC15.23■□□□□ 0.03
VMP1Q96GC9 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 POU5F1P6-201ENST00000466990 990 ntBASIC15.23■□□□□ 0.03
VMP1Q96GC9 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 RFPL4AP1-201ENST00000530883 850 ntBASIC15.23■□□□□ 0.03
VMP1Q96GC9 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 AC027796.2-201ENST00000575326 344 ntBASIC15.23■□□□□ 0.03
VMP1Q96GC9 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 MIR6080-201ENST00000617359 66 ntBASIC15.23■□□□□ 0.03
VMP1Q96GC9 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 AP005117.1-202ENST00000581724 1908 ntBASIC15.23■□□□□ 0.03
VMP1Q96GC9 AP3S2-216ENST00000617003 1561 ntBASIC15.23■□□□□ 0.03
VMP1Q96GC9 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
VMP1Q96GC9 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
VMP1Q96GC9 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 AC106028.4-201ENST00000614509 607 ntBASIC15.22■□□□□ 0.03
VMP1Q96GC9 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VMP1Q96GC9 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.22■□□□□ 0.03
VMP1Q96GC9 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms