Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 TIMM8BP1-201ENST00000452384 211 ntBASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 AC026120.1-201ENST00000611536 926 ntBASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ATG4AQ8WYN0 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 AC063926.3-201ENST00000624734 5658 ntBASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 AGAP7P-201ENST00000582299 2062 ntBASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 AGAP14-201ENST00000624701 2060 ntBASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 YBX2P1-201ENST00000394192 760 ntBASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 SLC25A39P2-201ENST00000537614 270 ntBASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 LINC00528-201ENST00000600723 2160 ntBASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.41■□□□□ 0.22
ATG4AQ8WYN0 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 AP3S2-216ENST00000617003 1561 ntBASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 AL139010.1-201ENST00000454878 894 ntBASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 PHKG1P2-201ENST00000457537 863 ntBASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 AC069335.1-201ENST00000489972 472 ntBASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.4■□□□□ 0.22
ATG4AQ8WYN0 IGHV3-62-201ENST00000520057 340 ntBASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms