Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 PARP8-206ENST00000503665 572 ntTSL 4 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 AC123567.1-201ENST00000548294 1261 ntBASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 AC127383.1-201ENST00000444697 1800 ntBASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX2-3Q8TAU0 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 AC136621.1-201ENST00000624017 2304 ntBASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 ELK1P1-201ENST00000485699 580 ntBASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 AC090616.6-203ENST00000579186 1945 ntBASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.57■□□□□ 0.56
NKX2-3Q8TAU0 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 TOMM22P5-201ENST00000416399 439 ntBASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 CTBP2P3-201ENST00000585629 1255 ntBASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 AC093726.1-201ENST00000608064 963 ntBASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.56■□□□□ 0.56
NKX2-3Q8TAU0 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms