Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SYNE3Q6ZMZ3 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SYNE3Q6ZMZ3 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.58
SYNE3Q6ZMZ3 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.64■□□□□ 0.58
SYNE3Q6ZMZ3 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
SYNE3Q6ZMZ3 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 TREML5P-201ENST00000421694 576 ntBASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE3Q6ZMZ3 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 AL080243.2-201ENST00000418783 582 ntBASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 DUX4L27-201ENST00000554796 1261 ntBASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE3Q6ZMZ3 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 AC097493.3-201ENST00000509725 367 ntBASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 TEX28P1-201ENST00000613479 1221 ntBASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 TEX28P2-201ENST00000617764 1221 ntBASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 AC093512.1-201ENST00000617969 520 ntBASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 AL033527.5-202ENST00000641632 1098 ntBASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
SYNE3Q6ZMZ3 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms