Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
RNF4P78317 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.64□□□□□ -0.07
RNF4P78317 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 AC093004.1-201ENST00000508850 424 ntBASIC14.64□□□□□ -0.07
RNF4P78317 SLED1-202ENST00000512051 380 ntBASIC14.64□□□□□ -0.07
RNF4P78317 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.64□□□□□ -0.07
RNF4P78317 TPRX2P-201ENST00000535362 881 ntBASIC14.64□□□□□ -0.07
RNF4P78317 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.64□□□□□ -0.07
RNF4P78317 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.64□□□□□ -0.07
RNF4P78317 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.64□□□□□ -0.07
RNF4P78317 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
RNF4P78317 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.64□□□□□ -0.07
RNF4P78317 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
RNF4P78317 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.64□□□□□ -0.07
RNF4P78317 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.64□□□□□ -0.07
RNF4P78317 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
RNF4P78317 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
RNF4P78317 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.63□□□□□ -0.07
RNF4P78317 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
RNF4P78317 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.63□□□□□ -0.07
RNF4P78317 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.63□□□□□ -0.07
RNF4P78317 AC015922.1-201ENST00000421102 1152 ntBASIC14.63□□□□□ -0.07
RNF4P78317 MEP1AP4-201ENST00000423244 1087 ntBASIC14.63□□□□□ -0.07
RNF4P78317 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.63□□□□□ -0.07
RNF4P78317 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.63□□□□□ -0.07
RNF4P78317 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
RNF4P78317 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.63□□□□□ -0.07
RNF4P78317 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.63□□□□□ -0.07
RNF4P78317 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.63□□□□□ -0.07
RNF4P78317 AL132655.2-201ENST00000596276 594 ntBASIC14.63□□□□□ -0.07
RNF4P78317 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.63□□□□□ -0.07
RNF4P78317 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.63□□□□□ -0.07
RNF4P78317 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.63□□□□□ -0.07
RNF4P78317 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.63□□□□□ -0.07
RNF4P78317 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.63□□□□□ -0.07
RNF4P78317 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
RNF4P78317 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.63□□□□□ -0.07
RNF4P78317 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
RNF4P78317 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.63□□□□□ -0.07
RNF4P78317 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.63□□□□□ -0.07
RNF4P78317 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
RNF4P78317 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
RNF4P78317 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
RNF4P78317 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
RNF4P78317 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
RNF4P78317 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
RNF4P78317 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
RNF4P78317 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
RNF4P78317 DFFBP1-201ENST00000433250 979 ntBASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms