Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PTPN9P43378 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
PTPN9P43378 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.4■□□□□ 0.22
PTPN9P43378 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 AC126177.1-201ENST00000547829 2218 ntBASIC16.4■□□□□ 0.22
PTPN9P43378 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN9P43378 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN9P43378 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.4■□□□□ 0.22
PTPN9P43378 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.4■□□□□ 0.22
PTPN9P43378 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.4■□□□□ 0.22
PTPN9P43378 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PTPN9P43378 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN9P43378 AC092337.1-201ENST00000568699 1129 ntBASIC16.4■□□□□ 0.22
PTPN9P43378 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 AF228730.6-201ENST00000641497 218 ntBASIC16.4■□□□□ 0.22
PTPN9P43378 AC084121.3-201ENST00000641716 218 ntBASIC16.4■□□□□ 0.22
PTPN9P43378 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.4■□□□□ 0.22
PTPN9P43378 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PTPN9P43378 AC103702.1-201ENST00000548801 2630 ntBASIC16.4■□□□□ 0.22
PTPN9P43378 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.4■□□□□ 0.22
PTPN9P43378 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN9P43378 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN9P43378 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.4■□□□□ 0.22
PTPN9P43378 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTPN9P43378 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PTPN9P43378 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
PTPN9P43378 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.39■□□□□ 0.21
PTPN9P43378 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 AC022144.1-201ENST00000602255 1580 ntBASIC16.39■□□□□ 0.21
PTPN9P43378 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.39■□□□□ 0.21
PTPN9P43378 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PTPN9P43378 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.39■□□□□ 0.21
PTPN9P43378 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
PTPN9P43378 BASP1P1-201ENST00000430708 665 ntBASIC16.39■□□□□ 0.21
PTPN9P43378 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.39■□□□□ 0.21
PTPN9P43378 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.39■□□□□ 0.21
PTPN9P43378 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.39■□□□□ 0.21
PTPN9P43378 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.39■□□□□ 0.21
PTPN9P43378 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.39■□□□□ 0.21
PTPN9P43378 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.39■□□□□ 0.21
PTPN9P43378 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.39■□□□□ 0.21
PTPN9P43378 AC004461.2-201ENST00000629517 803 ntBASIC16.39■□□□□ 0.21
PTPN9P43378 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.39■□□□□ 0.21
PTPN9P43378 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PTPN9P43378 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
PTPN9P43378 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.39■□□□□ 0.21
PTPN9P43378 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
PTPN9P43378 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.39■□□□□ 0.21
PTPN9P43378 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PTPN9P43378 AC104640.1-201ENST00000562617 2109 ntBASIC16.39■□□□□ 0.21
PTPN9P43378 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PTPN9P43378 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PTPN9P43378 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.38■□□□□ 0.21
PTPN9P43378 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.38■□□□□ 0.21
PTPN9P43378 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PTPN9P43378 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PTPN9P43378 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
PTPN9P43378 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PTPN9P43378 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.38■□□□□ 0.21
PTPN9P43378 AL133267.1-201ENST00000398220 340 ntBASIC16.38■□□□□ 0.21
PTPN9P43378 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.38■□□□□ 0.21
PTPN9P43378 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.38■□□□□ 0.21
PTPN9P43378 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms