Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HADHAP40939 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
HADHAP40939 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HADHAP40939 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HADHAP40939 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HADHAP40939 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HADHAP40939 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HADHAP40939 AL136982.4-201ENST00000437689 1740 ntBASIC16.05■□□□□ 0.16
HADHAP40939 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HADHAP40939 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.05■□□□□ 0.16
HADHAP40939 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HADHAP40939 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
HADHAP40939 AL161772.1-201ENST00000610494 4412 ntBASIC16.04■□□□□ 0.16
HADHAP40939 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
HADHAP40939 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.04■□□□□ 0.16
HADHAP40939 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
HADHAP40939 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.04■□□□□ 0.16
HADHAP40939 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.04■□□□□ 0.16
HADHAP40939 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.04■□□□□ 0.16
HADHAP40939 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.04■□□□□ 0.16
HADHAP40939 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.04■□□□□ 0.16
HADHAP40939 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.04■□□□□ 0.16
HADHAP40939 MIR6080-201ENST00000617359 66 ntBASIC16.04■□□□□ 0.16
HADHAP40939 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.04■□□□□ 0.16
HADHAP40939 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
HADHAP40939 BNIP3P1-202ENST00000550043 1585 ntBASIC16.04■□□□□ 0.16
HADHAP40939 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.04■□□□□ 0.16
HADHAP40939 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HADHAP40939 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.04■□□□□ 0.16
HADHAP40939 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.03■□□□□ 0.16
HADHAP40939 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HADHAP40939 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.03■□□□□ 0.16
HADHAP40939 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HADHAP40939 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.03■□□□□ 0.16
HADHAP40939 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
HADHAP40939 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.03■□□□□ 0.16
HADHAP40939 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.03■□□□□ 0.16
HADHAP40939 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.03■□□□□ 0.16
HADHAP40939 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
HADHAP40939 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
HADHAP40939 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.03■□□□□ 0.16
HADHAP40939 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.03■□□□□ 0.16
HADHAP40939 TSEN15P1-201ENST00000423257 515 ntBASIC16.03■□□□□ 0.16
HADHAP40939 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.03■□□□□ 0.16
HADHAP40939 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.03■□□□□ 0.16
HADHAP40939 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.03■□□□□ 0.16
HADHAP40939 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.03■□□□□ 0.16
HADHAP40939 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.03■□□□□ 0.16
HADHAP40939 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.03■□□□□ 0.16
HADHAP40939 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
HADHAP40939 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HADHAP40939 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
HADHAP40939 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.02■□□□□ 0.16
HADHAP40939 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HADHAP40939 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HADHAP40939 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HADHAP40939 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HADHAP40939 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HADHAP40939 KRT18P28-201ENST00000453838 1332 ntBASIC16.02■□□□□ 0.16
HADHAP40939 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HADHAP40939 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HADHAP40939 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HADHAP40939 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HADHAP40939 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HADHAP40939 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.02■□□□□ 0.16
HADHAP40939 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HADHAP40939 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms