Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.4□□□□□ -0.1
HOXD4P09016 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.4□□□□□ -0.1
HOXD4P09016 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.4□□□□□ -0.1
HOXD4P09016 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.4□□□□□ -0.1
HOXD4P09016 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 AL137784.3-201ENST00000623858 2288 ntBASIC14.4□□□□□ -0.1
HOXD4P09016 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HOXD4P09016 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXD4P09016 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
HOXD4P09016 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXD4P09016 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.39□□□□□ -0.11
HOXD4P09016 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HOXD4P09016 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 AC138969.3-201ENST00000546612 1459 ntBASIC14.39□□□□□ -0.11
HOXD4P09016 AC138932.2-201ENST00000548268 1459 ntBASIC14.39□□□□□ -0.11
HOXD4P09016 AC126755.4-201ENST00000549796 1459 ntBASIC14.39□□□□□ -0.11
HOXD4P09016 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXD4P09016 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.39□□□□□ -0.11
HOXD4P09016 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXD4P09016 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HOXD4P09016 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HOXD4P09016 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXD4P09016 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
HOXD4P09016 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXD4P09016 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HOXD4P09016 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
HOXD4P09016 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 U91328.1-201ENST00000437528 223 ntBASIC14.39□□□□□ -0.11
HOXD4P09016 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXD4P09016 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 AC055876.2-201ENST00000531834 546 ntBASIC14.39□□□□□ -0.11
HOXD4P09016 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXD4P09016 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.39□□□□□ -0.11
HOXD4P09016 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 AC099568.2-201ENST00000609194 695 ntBASIC14.39□□□□□ -0.11
HOXD4P09016 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.39□□□□□ -0.11
HOXD4P09016 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXD4P09016 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXD4P09016 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HOXD4P09016 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC14.39□□□□□ -0.11
HOXD4P09016 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
HOXD4P09016 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.39□□□□□ -0.11
HOXD4P09016 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.38□□□□□ -0.11
HOXD4P09016 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HOXD4P09016 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC14.38□□□□□ -0.11
HOXD4P09016 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HOXD4P09016 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
HOXD4P09016 SPDYE19P-201ENST00000338590 713 ntBASIC14.38□□□□□ -0.11
HOXD4P09016 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.38□□□□□ -0.11
HOXD4P09016 AC004987.2-201ENST00000395959 1148 ntBASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms