Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
APOEP02649 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.61■□□□□ 0.25
APOEP02649 TSSK5P-201ENST00000423978 907 ntBASIC16.61■□□□□ 0.25
APOEP02649 EEF1DP4-201ENST00000446006 880 ntBASIC16.61■□□□□ 0.25
APOEP02649 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.61■□□□□ 0.25
APOEP02649 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.61■□□□□ 0.25
APOEP02649 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.61■□□□□ 0.25
APOEP02649 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 AL096865.1-201ENST00000606796 927 ntBASIC16.61■□□□□ 0.25
APOEP02649 AJ011932.1-201ENST00000621707 465 ntBASIC16.61■□□□□ 0.25
APOEP02649 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.61■□□□□ 0.25
APOEP02649 AC092384.3-202ENST00000564646 2873 ntBASIC16.61■□□□□ 0.25
APOEP02649 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.61■□□□□ 0.25
APOEP02649 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
APOEP02649 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
APOEP02649 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
APOEP02649 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
APOEP02649 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
APOEP02649 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
APOEP02649 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
APOEP02649 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.6■□□□□ 0.25
APOEP02649 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
APOEP02649 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
APOEP02649 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
APOEP02649 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
APOEP02649 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
APOEP02649 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
APOEP02649 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.6■□□□□ 0.25
APOEP02649 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.6■□□□□ 0.25
APOEP02649 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.6■□□□□ 0.25
APOEP02649 BCRP1-201ENST00000444246 691 ntBASIC16.6■□□□□ 0.25
APOEP02649 AC004890.2-204ENST00000481968 304 ntBASIC16.6■□□□□ 0.25
APOEP02649 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.6■□□□□ 0.25
APOEP02649 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.6■□□□□ 0.25
APOEP02649 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.6■□□□□ 0.25
APOEP02649 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.6■□□□□ 0.25
APOEP02649 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
APOEP02649 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
APOEP02649 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
APOEP02649 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
APOEP02649 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
APOEP02649 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.6■□□□□ 0.25
APOEP02649 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
APOEP02649 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.6■□□□□ 0.25
APOEP02649 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
APOEP02649 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
APOEP02649 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.59■□□□□ 0.25
APOEP02649 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
APOEP02649 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
APOEP02649 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.59■□□□□ 0.25
APOEP02649 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
APOEP02649 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.59■□□□□ 0.25
APOEP02649 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
APOEP02649 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
APOEP02649 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.59■□□□□ 0.25
APOEP02649 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.59■□□□□ 0.25
APOEP02649 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.59■□□□□ 0.25
APOEP02649 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.59■□□□□ 0.25
APOEP02649 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.59■□□□□ 0.25
APOEP02649 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.59■□□□□ 0.25
APOEP02649 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.59■□□□□ 0.25
APOEP02649 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 AL512361.1-201ENST00000554200 418 ntBASIC16.59■□□□□ 0.25
APOEP02649 AC104640.1-201ENST00000562617 2109 ntBASIC16.59■□□□□ 0.25
APOEP02649 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.59■□□□□ 0.25
APOEP02649 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.59■□□□□ 0.25
APOEP02649 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 AL844908.2-201ENST00000609461 460 ntBASIC16.59■□□□□ 0.25
APOEP02649 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.59■□□□□ 0.25
APOEP02649 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.59■□□□□ 0.25
APOEP02649 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
APOEP02649 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
APOEP02649 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms