Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SSU72Q9NP77 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
SSU72Q9NP77 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
SSU72Q9NP77 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SSU72Q9NP77 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.71■□□□□ 0.1
SSU72Q9NP77 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
SSU72Q9NP77 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 KRT18P67-201ENST00000432816 1264 ntBASIC15.7■□□□□ 0.1
SSU72Q9NP77 FAM197Y8-203ENST00000450145 560 ntBASIC15.7■□□□□ 0.1
SSU72Q9NP77 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 UNC93B6-202ENST00000528242 690 ntBASIC15.7■□□□□ 0.1
SSU72Q9NP77 HNRNPUP1-201ENST00000554987 333 ntBASIC15.7■□□□□ 0.1
SSU72Q9NP77 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.7■□□□□ 0.1
SSU72Q9NP77 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SSU72Q9NP77 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 REXO1L2P-201ENST00000425429 2069 ntBASIC15.69■□□□□ 0.1
SSU72Q9NP77 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 FOXO1B-201ENST00000504678 1527 ntBASIC15.69■□□□□ 0.1
SSU72Q9NP77 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 AL136982.4-201ENST00000437689 1740 ntBASIC15.69■□□□□ 0.1
SSU72Q9NP77 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 AC105233.2-201ENST00000523697 349 ntBASIC15.69■□□□□ 0.1
SSU72Q9NP77 AF228730.5-201ENST00000530288 346 ntBASIC15.69■□□□□ 0.1
SSU72Q9NP77 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SSU72Q9NP77 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SSU72Q9NP77 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SSU72Q9NP77 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SSU72Q9NP77 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms