Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 AC025048.3-201ENST00000590609 569 ntBASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 AC008738.7-201ENST00000609744 511 ntBASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 AC005702.4-201ENST00000618393 416 ntBASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM39Q9HCM9 AL603832.2-201ENST00000566195 2125 ntBASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 AC132872.4-202ENST00000622924 2756 ntBASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 FAM207CP-201ENST00000443486 507 ntBASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 STOM-203ENST00000538954 1257 ntTSL 5 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 AC009118.2-201ENST00000613275 655 ntBASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM39Q9HCM9 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 AC112504.1-201ENST00000623415 1841 ntBASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 Z97205.2-201ENST00000564697 1639 ntBASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 AC114501.2-201ENST00000439631 535 ntBASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 AC135586.1-201ENST00000539323 574 ntBASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 MIR3197-201ENST00000582241 73 ntBASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 RN7SL204P-201ENST00000582831 262 ntBASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 AC004840.1-201ENST00000636359 365 ntBASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 AL109936.8-201ENST00000641772 604 ntBASIC15.73■□□□□ 0.11
TRIM39Q9HCM9 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms