Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM54Q9BYV2 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM54Q9BYV2 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.7■□□□□ 0.1
TRIM54Q9BYV2 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM54Q9BYV2 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM54Q9BYV2 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM54Q9BYV2 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM54Q9BYV2 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRIM54Q9BYV2 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 AL627223.1-201ENST00000416693 442 ntBASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 RPS8P6-201ENST00000426177 609 ntBASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 PPT1-215ENST00000641471 2368 ntBASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
TRIM54Q9BYV2 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 AC068418.2-201ENST00000577309 3703 ntBASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TRIM54Q9BYV2 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 BNIP3P1-202ENST00000550043 1585 ntBASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 AC254562.1-201ENST00000417586 456 ntBASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 RBPMS2P1-201ENST00000437762 623 ntBASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.67■□□□□ 0.1
TRIM54Q9BYV2 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms