Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF1Q92994 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
BRF1Q92994 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.62■□□□□ 0.57
BRF1Q92994 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.62■□□□□ 0.57
BRF1Q92994 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
BRF1Q92994 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
BRF1Q92994 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
BRF1Q92994 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.62■□□□□ 0.57
BRF1Q92994 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.62■□□□□ 0.57
BRF1Q92994 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 AC125807.1-201ENST00000483097 614 ntBASIC18.62■□□□□ 0.57
BRF1Q92994 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.62■□□□□ 0.57
BRF1Q92994 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.62■□□□□ 0.57
BRF1Q92994 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.62■□□□□ 0.57
BRF1Q92994 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.62■□□□□ 0.57
BRF1Q92994 AC051619.7-201ENST00000568314 623 ntBASIC18.62■□□□□ 0.57
BRF1Q92994 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.62■□□□□ 0.57
BRF1Q92994 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
BRF1Q92994 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
BRF1Q92994 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.62■□□□□ 0.57
BRF1Q92994 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.62■□□□□ 0.57
BRF1Q92994 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
BRF1Q92994 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.62■□□□□ 0.57
BRF1Q92994 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF1Q92994 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
BRF1Q92994 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.61■□□□□ 0.57
BRF1Q92994 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.61■□□□□ 0.57
BRF1Q92994 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.61■□□□□ 0.57
BRF1Q92994 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.61■□□□□ 0.57
BRF1Q92994 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 TARDBPP1-201ENST00000442013 1203 ntBASIC18.61■□□□□ 0.57
BRF1Q92994 KLF2P3-201ENST00000451977 1087 ntBASIC18.61■□□□□ 0.57
BRF1Q92994 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.61■□□□□ 0.57
BRF1Q92994 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.61■□□□□ 0.57
BRF1Q92994 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.61■□□□□ 0.57
BRF1Q92994 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.61■□□□□ 0.57
BRF1Q92994 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.61■□□□□ 0.57
BRF1Q92994 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.61■□□□□ 0.57
BRF1Q92994 AL138828.2-201ENST00000615812 383 ntBASIC18.61■□□□□ 0.57
BRF1Q92994 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 AP002414.2-201ENST00000591780 3365 ntBASIC18.61■□□□□ 0.57
BRF1Q92994 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
BRF1Q92994 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRF1Q92994 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.6■□□□□ 0.57
BRF1Q92994 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC18.6■□□□□ 0.57
BRF1Q92994 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 FO538757.1-201ENST00000623083 1397 ntBASIC18.6■□□□□ 0.57
BRF1Q92994 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 KRT18P28-201ENST00000453838 1332 ntBASIC18.6■□□□□ 0.57
BRF1Q92994 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
BRF1Q92994 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRF1Q92994 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms