Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 FO393414.2-201ENST00000405153 598 ntBASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 IGHV3-72-202ENST00000621503 303 ntBASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 CU639417.3-201ENST00000624240 1404 ntBASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SHROOM3Q8TF72 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 AC127383.1-201ENST00000444697 1800 ntBASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SHROOM3Q8TF72 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 AC092337.1-201ENST00000568699 1129 ntBASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 AC020658.6-201ENST00000623564 1870 ntBASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
SHROOM3Q8TF72 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 SLED1-202ENST00000512051 380 ntBASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 MIR943-201ENST00000401286 94 ntBASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.07■□□□□ 0.16
SHROOM3Q8TF72 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
SHROOM3Q8TF72 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms