Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 AC084121.3-201ENST00000641716 218 ntBASIC16.21■□□□□ 0.19
RTL3Q8N8U3 AC092127.1-201ENST00000567093 3455 ntBASIC16.21■□□□□ 0.19
RTL3Q8N8U3 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.21■□□□□ 0.19
RTL3Q8N8U3 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
RTL3Q8N8U3 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
RTL3Q8N8U3 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.21■□□□□ 0.18
RTL3Q8N8U3 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
RTL3Q8N8U3 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RTL3Q8N8U3 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
RTL3Q8N8U3 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RTL3Q8N8U3 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.21■□□□□ 0.18
RTL3Q8N8U3 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.21■□□□□ 0.18
RTL3Q8N8U3 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
RTL3Q8N8U3 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 FAM8A3P-201ENST00000427218 844 ntBASIC16.2■□□□□ 0.18
RTL3Q8N8U3 KRT18P64-201ENST00000434946 1219 ntBASIC16.2■□□□□ 0.18
RTL3Q8N8U3 SPDYE18-201ENST00000510091 1050 ntBASIC16.2■□□□□ 0.18
RTL3Q8N8U3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RTL3Q8N8U3 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 HMGN1P19-201ENST00000436976 333 ntBASIC16.19■□□□□ 0.18
RTL3Q8N8U3 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 AC104794.3-201ENST00000566840 1248 ntBASIC16.19■□□□□ 0.18
RTL3Q8N8U3 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 AC127383.1-201ENST00000444697 1800 ntBASIC16.19■□□□□ 0.18
RTL3Q8N8U3 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RTL3Q8N8U3 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms