Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
DEPDC4Q8N2C3 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 AC139749.1-202ENST00000617529 3139 ntBASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 ANKRD19P-201ENST00000338192 862 ntBASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 HAUS4P1-201ENST00000406739 1145 ntBASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 AC004832.2-201ENST00000426397 482 ntBASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
DEPDC4Q8N2C3 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 LINC01101-201ENST00000622953 1884 ntBASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 AC023274.1-201ENST00000418278 595 ntBASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 UPF3AP3-201ENST00000420996 769 ntBASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 MAL2-202ENST00000531508 892 ntTSL 3 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.84□□□□□ -0.03
DEPDC4Q8N2C3 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms