Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
SKA3Q8IX90 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
SKA3Q8IX90 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SKA3Q8IX90 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.07□□□□□ -0.16
SKA3Q8IX90 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 CNN2P2-201ENST00000443536 909 ntBASIC14.07□□□□□ -0.16
SKA3Q8IX90 CNN2P3-201ENST00000450201 906 ntBASIC14.07□□□□□ -0.16
SKA3Q8IX90 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 AL133215.2-201ENST00000609242 977 ntBASIC14.07□□□□□ -0.16
SKA3Q8IX90 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 AL136317.3-201ENST00000618497 906 ntBASIC14.07□□□□□ -0.16
SKA3Q8IX90 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 TUBB3P1-201ENST00000405796 1332 ntBASIC14.07□□□□□ -0.16
SKA3Q8IX90 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 AC011477.6-201ENST00000604980 1927 ntBASIC14.07□□□□□ -0.16
SKA3Q8IX90 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.07□□□□□ -0.16
SKA3Q8IX90 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SKA3Q8IX90 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.06□□□□□ -0.16
SKA3Q8IX90 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SKA3Q8IX90 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.06□□□□□ -0.16
SKA3Q8IX90 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms