Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 AL607033.1-201ENST00000623900 1599 ntBASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 AC136604.1-201ENST00000418535 575 ntBASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 AL596442.2-201ENST00000610240 980 ntBASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 AC112693.3-201ENST00000624819 1983 ntBASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
ZNF549Q6P9A3 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 AC004967.1-201ENST00000453589 447 ntBASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 MIR6080-201ENST00000617359 66 ntBASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
ZNF549Q6P9A3 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
ZNF549Q6P9A3 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.71■□□□□ 0.1
ZNF549Q6P9A3 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
ZNF549Q6P9A3 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.71■□□□□ 0.1
ZNF549Q6P9A3 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
ZNF549Q6P9A3 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
ZNF549Q6P9A3 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
ZNF549Q6P9A3 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF549Q6P9A3 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF549Q6P9A3 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF549Q6P9A3 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.7■□□□□ 0.1
ZNF549Q6P9A3 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
ZNF549Q6P9A3 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF549Q6P9A3 AL109954.1-202ENST00000564051 2148 ntBASIC15.7■□□□□ 0.1
ZNF549Q6P9A3 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.7■□□□□ 0.1
ZNF549Q6P9A3 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ZNF549Q6P9A3 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.7■□□□□ 0.1
ZNF549Q6P9A3 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms