Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
SOX2P48431 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.17
SOX2P48431 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX2P48431 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX2P48431 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
SOX2P48431 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX2P48431 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX2P48431 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX2P48431 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
SOX2P48431 SNX18-202ENST00000343017 3140 ntBASIC14.01□□□□□ -0.17
SOX2P48431 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
SOX2P48431 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC14.01□□□□□ -0.17
SOX2P48431 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
SOX2P48431 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
SOX2P48431 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SOX2P48431 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.01□□□□□ -0.17
SOX2P48431 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.01□□□□□ -0.17
SOX2P48431 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 PMS2P7-201ENST00000506558 1336 ntBASIC14.01□□□□□ -0.17
SOX2P48431 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.01□□□□□ -0.17
SOX2P48431 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC14.01□□□□□ -0.17
SOX2P48431 MED22-202ENST00000371999 987 ntTSL 3 BASIC14.01□□□□□ -0.17
SOX2P48431 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC14.01□□□□□ -0.17
SOX2P48431 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
SOX2P48431 IGLL3P-201ENST00000412472 434 ntBASIC14.01□□□□□ -0.17
SOX2P48431 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 VN2R19P-201ENST00000442399 1052 ntBASIC14.01□□□□□ -0.17
SOX2P48431 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 EMBP1-201ENST00000458200 901 ntBASIC14.01□□□□□ -0.17
SOX2P48431 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.01□□□□□ -0.17
SOX2P48431 AC109635.5-201ENST00000533593 962 ntBASIC14.01□□□□□ -0.17
SOX2P48431 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 FAM215A-202ENST00000632077 792 ntBASIC14.01□□□□□ -0.17
SOX2P48431 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.01□□□□□ -0.17
SOX2P48431 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.01□□□□□ -0.17
SOX2P48431 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.01□□□□□ -0.17
SOX2P48431 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.01□□□□□ -0.17
SOX2P48431 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 AC018892.3-201ENST00000623986 2499 ntBASIC14.01□□□□□ -0.17
SOX2P48431 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.01□□□□□ -0.17
SOX2P48431 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
SOX2P48431 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX2P48431 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
SOX2P48431 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SOX2P48431 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14□□□□□ -0.17
SOX2P48431 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC14□□□□□ -0.17
SOX2P48431 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
SOX2P48431 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14□□□□□ -0.17
SOX2P48431 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SOX2P48431 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SOX2P48431 CRYGEP-201ENST00000412192 528 ntBASIC14□□□□□ -0.17
SOX2P48431 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC14□□□□□ -0.17
SOX2P48431 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC14□□□□□ -0.17
SOX2P48431 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 AC002347.1-201ENST00000569543 541 ntBASIC14□□□□□ -0.17
SOX2P48431 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
SOX2P48431 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14□□□□□ -0.17
SOX2P48431 AL121912.1-201ENST00000603683 238 ntBASIC14□□□□□ -0.17
SOX2P48431 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14□□□□□ -0.17
SOX2P48431 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14□□□□□ -0.17
SOX2P48431 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SOX2P48431 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SOX2P48431 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14□□□□□ -0.17
SOX2P48431 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms