Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 WFDC1-204ENST00000613603 549 ntBASIC16.18■□□□□ 0.18
SLC6A4P31645 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.18■□□□□ 0.18
SLC6A4P31645 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC6A4P31645 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SLC6A4P31645 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.18■□□□□ 0.18
SLC6A4P31645 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SLC6A4P31645 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
SLC6A4P31645 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SLC6A4P31645 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC6A4P31645 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC6A4P31645 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.18■□□□□ 0.18
SLC6A4P31645 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC6A4P31645 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC6A4P31645 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC6A4P31645 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SLC6A4P31645 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SLC6A4P31645 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC6A4P31645 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
SLC6A4P31645 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SLC6A4P31645 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC6A4P31645 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
SLC6A4P31645 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 AL139384.1-201ENST00000612143 3047 ntBASIC16.17■□□□□ 0.18
SLC6A4P31645 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.17■□□□□ 0.18
SLC6A4P31645 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.17■□□□□ 0.18
SLC6A4P31645 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC6A4P31645 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.17■□□□□ 0.18
SLC6A4P31645 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SLC6A4P31645 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SLC6A4P31645 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SLC6A4P31645 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SLC6A4P31645 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC6A4P31645 AP006294.1-201ENST00000415407 339 ntBASIC16.17■□□□□ 0.18
SLC6A4P31645 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
SLC6A4P31645 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SLC6A4P31645 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.17■□□□□ 0.18
SLC6A4P31645 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.17■□□□□ 0.18
SLC6A4P31645 AC104596.2-201ENST00000512793 793 ntBASIC16.17■□□□□ 0.18
SLC6A4P31645 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC6A4P31645 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.17■□□□□ 0.18
SLC6A4P31645 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.17■□□□□ 0.18
SLC6A4P31645 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 CU639417.3-201ENST00000624240 1404 ntBASIC16.17■□□□□ 0.18
SLC6A4P31645 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC6A4P31645 AP005117.1-202ENST00000581724 1908 ntBASIC16.17■□□□□ 0.18
SLC6A4P31645 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SLC6A4P31645 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC6A4P31645 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SLC6A4P31645 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC6A4P31645 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
SLC6A4P31645 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.16■□□□□ 0.18
SLC6A4P31645 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SLC6A4P31645 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
SLC6A4P31645 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.16■□□□□ 0.18
SLC6A4P31645 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.16■□□□□ 0.18
SLC6A4P31645 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.16■□□□□ 0.18
SLC6A4P31645 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 AC098614.1-201ENST00000368528 745 ntBASIC16.16■□□□□ 0.18
SLC6A4P31645 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.16■□□□□ 0.18
SLC6A4P31645 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC16.16■□□□□ 0.18
SLC6A4P31645 INE1-201ENST00000456273 945 ntBASIC16.16■□□□□ 0.18
SLC6A4P31645 KRT18P43-201ENST00000469825 1281 ntBASIC16.16■□□□□ 0.18
SLC6A4P31645 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.16■□□□□ 0.18
SLC6A4P31645 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.16■□□□□ 0.18
SLC6A4P31645 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.16■□□□□ 0.18
SLC6A4P31645 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.16■□□□□ 0.18
SLC6A4P31645 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.16■□□□□ 0.18
SLC6A4P31645 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SLC6A4P31645 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
SLC6A4P31645 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 CICP13-201ENST00000422015 2789 ntBASIC16.16■□□□□ 0.18
SLC6A4P31645 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
SLC6A4P31645 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SLC6A4P31645 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
SLC6A4P31645 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
SLC6A4P31645 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.16■□□□□ 0.18
SLC6A4P31645 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.16■□□□□ 0.18
SLC6A4P31645 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.16■□□□□ 0.18
SLC6A4P31645 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SLC6A4P31645 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SLC6A4P31645 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms