Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
MSH3P20585 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.8■□□□□ 0.12
MSH3P20585 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.8■□□□□ 0.12
MSH3P20585 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.8■□□□□ 0.12
MSH3P20585 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
MSH3P20585 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
MSH3P20585 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
MSH3P20585 AC100757.3-201ENST00000622361 1406 ntBASIC15.79■□□□□ 0.12
MSH3P20585 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
MSH3P20585 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
MSH3P20585 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
MSH3P20585 AL512638.1-201ENST00000457493 794 ntBASIC15.79■□□□□ 0.12
MSH3P20585 PHKG1P2-201ENST00000457537 863 ntBASIC15.79■□□□□ 0.12
MSH3P20585 RN7SL618P-201ENST00000477850 296 ntBASIC15.79■□□□□ 0.12
MSH3P20585 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.79■□□□□ 0.12
MSH3P20585 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15.79■□□□□ 0.12
MSH3P20585 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.79■□□□□ 0.12
MSH3P20585 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.79■□□□□ 0.12
MSH3P20585 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC15.79■□□□□ 0.12
MSH3P20585 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 RAB34-223ENST00000636154 730 ntTSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.79■□□□□ 0.12
MSH3P20585 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.79■□□□□ 0.12
MSH3P20585 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
MSH3P20585 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
MSH3P20585 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.78■□□□□ 0.12
MSH3P20585 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.78■□□□□ 0.12
MSH3P20585 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
MSH3P20585 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
MSH3P20585 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.78■□□□□ 0.12
MSH3P20585 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
MSH3P20585 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
MSH3P20585 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.78■□□□□ 0.12
MSH3P20585 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
MSH3P20585 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MSH3P20585 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.78■□□□□ 0.12
MSH3P20585 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.78■□□□□ 0.12
MSH3P20585 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.78■□□□□ 0.12
MSH3P20585 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.78■□□□□ 0.12
MSH3P20585 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.78■□□□□ 0.12
MSH3P20585 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms