Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
HOXD4P09016 AC245100.5-201ENST00000452108 331 ntBASIC14.42□□□□□ -0.1
HOXD4P09016 DOC2GP-202ENST00000514950 1163 ntBASIC14.42□□□□□ -0.1
HOXD4P09016 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXD4P09016 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXD4P09016 AL512361.1-201ENST00000554200 418 ntBASIC14.42□□□□□ -0.1
HOXD4P09016 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXD4P09016 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.42□□□□□ -0.1
HOXD4P09016 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.42□□□□□ -0.1
HOXD4P09016 AC004840.1-201ENST00000636359 365 ntBASIC14.42□□□□□ -0.1
HOXD4P09016 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HOXD4P09016 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HOXD4P09016 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.42□□□□□ -0.1
HOXD4P09016 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
HOXD4P09016 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HOXD4P09016 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HOXD4P09016 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
HOXD4P09016 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD4P09016 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
HOXD4P09016 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD4P09016 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
HOXD4P09016 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXD4P09016 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
HOXD4P09016 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXD4P09016 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
HOXD4P09016 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD4P09016 ARSEP1-201ENST00000420443 635 ntBASIC14.41□□□□□ -0.1
HOXD4P09016 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.41□□□□□ -0.1
HOXD4P09016 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.41□□□□□ -0.1
HOXD4P09016 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.41□□□□□ -0.1
HOXD4P09016 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HOXD4P09016 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXD4P09016 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXD4P09016 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.41□□□□□ -0.1
HOXD4P09016 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD4P09016 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
HOXD4P09016 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD4P09016 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXD4P09016 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.41□□□□□ -0.1
HOXD4P09016 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD4P09016 AC079328.2-201ENST00000561241 3354 ntBASIC14.41□□□□□ -0.1
HOXD4P09016 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
HOXD4P09016 AL122018.1-201ENST00000446607 2310 ntBASIC14.41□□□□□ -0.1
HOXD4P09016 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
HOXD4P09016 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC14.41□□□□□ -0.1
HOXD4P09016 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.41□□□□□ -0.1
HOXD4P09016 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HOXD4P09016 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXD4P09016 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXD4P09016 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 AC006058.4-201ENST00000624016 1670 ntBASIC14.4□□□□□ -0.1
HOXD4P09016 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HOXD4P09016 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.4□□□□□ -0.1
HOXD4P09016 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.4□□□□□ -0.1
HOXD4P09016 GPR53P-205ENST00000457298 1084 ntBASIC14.4□□□□□ -0.1
HOXD4P09016 AC011495.1-201ENST00000498085 584 ntBASIC14.4□□□□□ -0.1
HOXD4P09016 API5-211ENST00000534695 560 ntTSL 5 BASIC14.4□□□□□ -0.1
HOXD4P09016 AC044860.1-202ENST00000559481 777 ntBASIC14.4□□□□□ -0.1
HOXD4P09016 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms