Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
PDGFAP04085 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.88□□□□□ -0.03
PDGFAP04085 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.88□□□□□ -0.03
PDGFAP04085 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.88□□□□□ -0.03
PDGFAP04085 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.88□□□□□ -0.03
PDGFAP04085 AC092552.1-201ENST00000547243 906 ntBASIC14.88□□□□□ -0.03
PDGFAP04085 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.88□□□□□ -0.03
PDGFAP04085 AL606495.2-201ENST00000605867 535 ntBASIC14.88□□□□□ -0.03
PDGFAP04085 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PDGFAP04085 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PDGFAP04085 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
PDGFAP04085 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PDGFAP04085 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.88□□□□□ -0.03
PDGFAP04085 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PDGFAP04085 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
PDGFAP04085 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.87□□□□□ -0.03
PDGFAP04085 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
PDGFAP04085 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 REXO1L6P-201ENST00000603433 1515 ntBASIC14.87□□□□□ -0.03
PDGFAP04085 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC14.87□□□□□ -0.03
PDGFAP04085 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.87□□□□□ -0.03
PDGFAP04085 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 MEP1AP4-201ENST00000423244 1087 ntBASIC14.87□□□□□ -0.03
PDGFAP04085 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.87□□□□□ -0.03
PDGFAP04085 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.87□□□□□ -0.03
PDGFAP04085 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.87□□□□□ -0.03
PDGFAP04085 CROCCP4-201ENST00000457096 498 ntBASIC14.87□□□□□ -0.03
PDGFAP04085 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.87□□□□□ -0.03
PDGFAP04085 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.87□□□□□ -0.03
PDGFAP04085 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.87□□□□□ -0.03
PDGFAP04085 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.87□□□□□ -0.03
PDGFAP04085 AC093726.1-201ENST00000608064 963 ntBASIC14.87□□□□□ -0.03
PDGFAP04085 MIR8072-201ENST00000614241 80 ntBASIC14.87□□□□□ -0.03
PDGFAP04085 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
PDGFAP04085 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.87□□□□□ -0.03
PDGFAP04085 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.87□□□□□ -0.03
PDGFAP04085 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
PDGFAP04085 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
PDGFAP04085 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.87□□□□□ -0.03
PDGFAP04085 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.87□□□□□ -0.03
PDGFAP04085 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PDGFAP04085 CYP2T1P-202ENST00000641596 2535 ntBASIC14.87□□□□□ -0.03
PDGFAP04085 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
PDGFAP04085 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PDGFAP04085 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PDGFAP04085 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PDGFAP04085 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PDGFAP04085 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PDGFAP04085 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.86□□□□□ -0.03
PDGFAP04085 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PDGFAP04085 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PDGFAP04085 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PDGFAP04085 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PDGFAP04085 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.86□□□□□ -0.03
PDGFAP04085 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms