Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CHRNA1P02708 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA1P02708 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.07■□□□□ 0.32
CHRNA1P02708 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA1P02708 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA1P02708 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA1P02708 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA1P02708 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA1P02708 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHRNA1P02708 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CHRNA1P02708 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CHRNA1P02708 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA1P02708 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA1P02708 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA1P02708 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC17.06■□□□□ 0.32
CHRNA1P02708 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.06■□□□□ 0.32
CHRNA1P02708 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.06■□□□□ 0.32
CHRNA1P02708 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.06■□□□□ 0.32
CHRNA1P02708 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.06■□□□□ 0.32
CHRNA1P02708 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.06■□□□□ 0.32
CHRNA1P02708 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.06■□□□□ 0.32
CHRNA1P02708 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CHRNA1P02708 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CHRNA1P02708 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.06■□□□□ 0.32
CHRNA1P02708 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHRNA1P02708 AL133338.1-201ENST00000565695 1517 ntBASIC17.06■□□□□ 0.32
CHRNA1P02708 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CHRNA1P02708 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CHRNA1P02708 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.05■□□□□ 0.32
CHRNA1P02708 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
CHRNA1P02708 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.05■□□□□ 0.32
CHRNA1P02708 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CHRNA1P02708 AL138709.1-201ENST00000614840 1693 ntBASIC17.05■□□□□ 0.32
CHRNA1P02708 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 AC006001.1-201ENST00000325130 474 ntBASIC17.05■□□□□ 0.32
CHRNA1P02708 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.05■□□□□ 0.32
CHRNA1P02708 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.05■□□□□ 0.32
CHRNA1P02708 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.05■□□□□ 0.32
CHRNA1P02708 RN7SL560P-201ENST00000577943 264 ntBASIC17.05■□□□□ 0.32
CHRNA1P02708 AC145423.3-201ENST00000615987 467 ntBASIC17.05■□□□□ 0.32
CHRNA1P02708 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.05■□□□□ 0.32
CHRNA1P02708 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.05■□□□□ 0.32
CHRNA1P02708 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.05■□□□□ 0.32
CHRNA1P02708 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.05■□□□□ 0.32
CHRNA1P02708 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.05■□□□□ 0.32
CHRNA1P02708 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
CHRNA1P02708 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHRNA1P02708 AC069224.1-201ENST00000566372 1715 ntBASIC17.04■□□□□ 0.32
CHRNA1P02708 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CHRNA1P02708 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CHRNA1P02708 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
CHRNA1P02708 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHRNA1P02708 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.04■□□□□ 0.32
CHRNA1P02708 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.04■□□□□ 0.32
CHRNA1P02708 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHRNA1P02708 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHRNA1P02708 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHRNA1P02708 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.04■□□□□ 0.32
CHRNA1P02708 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHRNA1P02708 MTHFR-217ENST00000641820 1569 ntBASIC17.04■□□□□ 0.32
CHRNA1P02708 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHRNA1P02708 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHRNA1P02708 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHRNA1P02708 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.04■□□□□ 0.32
CHRNA1P02708 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.04■□□□□ 0.32
CHRNA1P02708 FAM197Y7-201ENST00000432892 766 ntBASIC17.04■□□□□ 0.32
CHRNA1P02708 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHRNA1P02708 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.04■□□□□ 0.32
CHRNA1P02708 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.04■□□□□ 0.32
CHRNA1P02708 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.04■□□□□ 0.32
CHRNA1P02708 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.04■□□□□ 0.32
CHRNA1P02708 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms