Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.4■□□□□ 0.06
TNFP01375 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TNFP01375 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 C1QBPP1-201ENST00000400117 770 ntBASIC15.4■□□□□ 0.06
TNFP01375 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFP01375 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 TMEM14DP-201ENST00000422205 345 ntBASIC15.4■□□□□ 0.06
TNFP01375 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 ACTG1P3-201ENST00000431775 1114 ntBASIC15.4■□□□□ 0.06
TNFP01375 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFP01375 MIR4313-201ENST00000580760 101 ntBASIC15.4■□□□□ 0.06
TNFP01375 AC008735.3-201ENST00000596646 500 ntBASIC15.4■□□□□ 0.06
TNFP01375 AC000095.1-201ENST00000603208 874 ntBASIC15.4■□□□□ 0.06
TNFP01375 MIR6752-201ENST00000618442 71 ntBASIC15.4■□□□□ 0.06
TNFP01375 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.4■□□□□ 0.06
TNFP01375 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
TNFP01375 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFP01375 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TNFP01375 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFP01375 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
TNFP01375 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFP01375 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TNFP01375 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFP01375 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TNFP01375 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.4■□□□□ 0.06
TNFP01375 AC124067.4-201ENST00000519691 2379 ntBASIC15.4■□□□□ 0.06
TNFP01375 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC15.4■□□□□ 0.06
TNFP01375 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TNFP01375 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFP01375 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.39■□□□□ 0.05
TNFP01375 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFP01375 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFP01375 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TNFP01375 AC068587.6-202ENST00000641839 5619 ntBASIC15.39■□□□□ 0.05
TNFP01375 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TNFP01375 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 AL133267.1-201ENST00000398220 340 ntBASIC15.39■□□□□ 0.05
TNFP01375 AC079776.1-201ENST00000401540 1152 ntBASIC15.39■□□□□ 0.05
TNFP01375 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFP01375 AC234783.1-201ENST00000441761 496 ntBASIC15.39■□□□□ 0.05
TNFP01375 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TNFP01375 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.39■□□□□ 0.05
TNFP01375 VDAC1P7-201ENST00000462417 847 ntBASIC15.39■□□□□ 0.05
TNFP01375 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.39■□□□□ 0.05
TNFP01375 TDH-203ENST00000531764 1110 ntBASIC15.39■□□□□ 0.05
TNFP01375 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFP01375 BTNL10-201ENST00000595971 695 ntBASIC15.39■□□□□ 0.05
TNFP01375 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TNFP01375 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFP01375 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.39■□□□□ 0.05
TNFP01375 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.39■□□□□ 0.05
TNFP01375 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
TNFP01375 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.39■□□□□ 0.05
TNFP01375 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TNFP01375 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
TNFP01375 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.38■□□□□ 0.05
TNFP01375 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TNFP01375 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.38■□□□□ 0.05
TNFP01375 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.38■□□□□ 0.05
TNFP01375 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TNFP01375 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TNFP01375 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TNFP01375 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TNFP01375 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.38■□□□□ 0.05
TNFP01375 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.38■□□□□ 0.05
TNFP01375 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TNFP01375 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.38■□□□□ 0.05
TNFP01375 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.38■□□□□ 0.05
TNFP01375 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
TNFP01375 KRT43P-201ENST00000434019 910 ntBASIC15.38■□□□□ 0.05
TNFP01375 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.38■□□□□ 0.05
TNFP01375 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.38■□□□□ 0.05
TNFP01375 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TNFP01375 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
TNFP01375 SLC25A47P1-201ENST00000531577 414 ntBASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms