Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS4BO75351 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
VPS4BO75351 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS4BO75351 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
VPS4BO75351 MIR943-201ENST00000401286 94 ntBASIC15.59■□□□□ 0.09
VPS4BO75351 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
VPS4BO75351 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS4BO75351 AC055876.3-201ENST00000431496 288 ntBASIC15.59■□□□□ 0.09
VPS4BO75351 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
VPS4BO75351 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC15.59■□□□□ 0.09
VPS4BO75351 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.59■□□□□ 0.09
VPS4BO75351 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.59■□□□□ 0.09
VPS4BO75351 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.59■□□□□ 0.09
VPS4BO75351 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS4BO75351 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.59■□□□□ 0.09
VPS4BO75351 AC138649.4-201ENST00000612222 287 ntBASIC15.59■□□□□ 0.09
VPS4BO75351 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
VPS4BO75351 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.59■□□□□ 0.09
VPS4BO75351 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.59■□□□□ 0.09
VPS4BO75351 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.59■□□□□ 0.09
VPS4BO75351 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS4BO75351 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS4BO75351 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
VPS4BO75351 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS4BO75351 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VPS4BO75351 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VPS4BO75351 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VPS4BO75351 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
VPS4BO75351 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VPS4BO75351 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.09
VPS4BO75351 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VPS4BO75351 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
VPS4BO75351 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VPS4BO75351 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.58■□□□□ 0.09
VPS4BO75351 MIR600HG-201ENST00000449175 5984 ntBASIC15.58■□□□□ 0.08
VPS4BO75351 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS4BO75351 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.58■□□□□ 0.08
VPS4BO75351 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
VPS4BO75351 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.58■□□□□ 0.08
VPS4BO75351 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
VPS4BO75351 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
VPS4BO75351 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.58■□□□□ 0.08
VPS4BO75351 SPDYE11-202ENST00000450699 704 ntBASIC15.58■□□□□ 0.08
VPS4BO75351 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.58■□□□□ 0.08
VPS4BO75351 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.58■□□□□ 0.08
VPS4BO75351 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.58■□□□□ 0.08
VPS4BO75351 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS4BO75351 SPDYE9P-201ENST00000570642 692 ntBASIC15.58■□□□□ 0.08
VPS4BO75351 SPDYE10P-202ENST00000612005 668 ntBASIC15.58■□□□□ 0.08
VPS4BO75351 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
VPS4BO75351 SPDYE8P-202ENST00000612377 668 ntBASIC15.58■□□□□ 0.08
VPS4BO75351 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.58■□□□□ 0.08
VPS4BO75351 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
VPS4BO75351 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS4BO75351 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
VPS4BO75351 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS4BO75351 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS4BO75351 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.08
VPS4BO75351 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
VPS4BO75351 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
VPS4BO75351 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
VPS4BO75351 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.58■□□□□ 0.08
VPS4BO75351 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS4BO75351 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS4BO75351 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS4BO75351 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS4BO75351 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS4BO75351 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VPS4BO75351 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS4BO75351 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS4BO75351 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
VPS4BO75351 AP003680.1-201ENST00000598970 3660 ntBASIC15.57■□□□□ 0.08
VPS4BO75351 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS4BO75351 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms