Protein–RNA interactions for Protein: Q9UHP3

USP25, Ubiquitin carboxyl-terminal hydrolase 25, humanhuman

Predictions only

Length 1,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP25Q9UHP3 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
USP25Q9UHP3 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.23■□□□□ 0.51
USP25Q9UHP3 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.23■□□□□ 0.51
USP25Q9UHP3 RNA5SP416-201ENST00000516838 111 ntBASIC18.23■□□□□ 0.51
USP25Q9UHP3 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.23■□□□□ 0.51
USP25Q9UHP3 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.23■□□□□ 0.51
USP25Q9UHP3 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
USP25Q9UHP3 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.23■□□□□ 0.51
USP25Q9UHP3 AC090616.6-203ENST00000579186 1945 ntBASIC18.23■□□□□ 0.51
USP25Q9UHP3 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
USP25Q9UHP3 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP25Q9UHP3 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 AC007191.1-201ENST00000623179 2995 ntBASIC18.22■□□□□ 0.51
USP25Q9UHP3 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 GPX1P2-201ENST00000429271 606 ntBASIC18.22■□□□□ 0.51
USP25Q9UHP3 FDX1P1-201ENST00000449115 551 ntBASIC18.22■□□□□ 0.51
USP25Q9UHP3 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 AC098859.1-201ENST00000502915 1238 ntBASIC18.22■□□□□ 0.51
USP25Q9UHP3 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 BX640515.1-201ENST00000617215 977 ntBASIC18.22■□□□□ 0.51
USP25Q9UHP3 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.22■□□□□ 0.51
USP25Q9UHP3 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP25Q9UHP3 AKAP8P1-201ENST00000434743 1349 ntBASIC18.22■□□□□ 0.51
USP25Q9UHP3 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
USP25Q9UHP3 LINC00528-201ENST00000600723 2160 ntBASIC18.21■□□□□ 0.51
USP25Q9UHP3 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
USP25Q9UHP3 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC18.21■□□□□ 0.51
USP25Q9UHP3 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC18.21■□□□□ 0.51
USP25Q9UHP3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.21■□□□□ 0.51
USP25Q9UHP3 AL590627.1-203ENST00000421194 1026 ntBASIC18.21■□□□□ 0.51
USP25Q9UHP3 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.21■□□□□ 0.51
USP25Q9UHP3 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.21■□□□□ 0.51
USP25Q9UHP3 RARRES2P8-201ENST00000566335 367 ntBASIC18.21■□□□□ 0.51
USP25Q9UHP3 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.21■□□□□ 0.51
USP25Q9UHP3 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.21■□□□□ 0.51
USP25Q9UHP3 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.21■□□□□ 0.51
USP25Q9UHP3 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
USP25Q9UHP3 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
USP25Q9UHP3 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms