Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC9.84□□□□□ -0.83
LINC00643Q86TS7 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 USP17L7-201ENST00000530447 2022 ntAPPRIS P1 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 BX324167.2-201ENST00000623717 3316 ntBASIC9.83□□□□□ -0.84
LINC00643Q86TS7 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 HPSE-201ENST00000311412 4615 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 UNC93B3-201ENST00000308076 687 ntBASIC9.83□□□□□ -0.84
LINC00643Q86TS7 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 AC113404.2-201ENST00000507884 177 ntBASIC9.83□□□□□ -0.84
LINC00643Q86TS7 PVT1-219ENST00000523427 938 ntTSL 3 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 REEP1-209ENST00000541910 969 ntTSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 AC004264.1-201ENST00000608354 794 ntBASIC9.83□□□□□ -0.84
LINC00643Q86TS7 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 ZNF331-201ENST00000253144 5042 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 ATP11A-201ENST00000375630 8768 ntAPPRIS ALT2 TSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
LINC00643Q86TS7 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC9.83□□□□□ -0.84
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms