Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 LINC00628-201ENST00000628516 1289 ntBASIC18.95■□□□□ 0.62
RNF20Q5VTR2 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 AC104640.1-201ENST00000562617 2109 ntBASIC18.95■□□□□ 0.62
RNF20Q5VTR2 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RNF20Q5VTR2 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 KRT8P12-202ENST00000472924 1397 ntBASIC18.94■□□□□ 0.62
RNF20Q5VTR2 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 LINC00554-201ENST00000564841 3011 ntBASIC18.94■□□□□ 0.62
RNF20Q5VTR2 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 HLA-J-203ENST00000494367 1087 ntBASIC18.94■□□□□ 0.62
RNF20Q5VTR2 AC069262.1-201ENST00000539058 672 ntBASIC18.94■□□□□ 0.62
RNF20Q5VTR2 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 AC090616.6-203ENST00000579186 1945 ntBASIC18.94■□□□□ 0.62
RNF20Q5VTR2 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 AC136621.1-201ENST00000624017 2304 ntBASIC18.94■□□□□ 0.62
RNF20Q5VTR2 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RNF20Q5VTR2 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.93■□□□□ 0.62
RNF20Q5VTR2 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 AC136604.1-201ENST00000418535 575 ntBASIC18.93■□□□□ 0.62
RNF20Q5VTR2 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 AC097359.3-201ENST00000603982 1210 ntBASIC18.93■□□□□ 0.62
RNF20Q5VTR2 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.93■□□□□ 0.62
RNF20Q5VTR2 AC073347.1-201ENST00000421633 2643 ntBASIC18.93■□□□□ 0.62
RNF20Q5VTR2 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
RNF20Q5VTR2 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.92■□□□□ 0.62
RNF20Q5VTR2 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RNF20Q5VTR2 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RNF20Q5VTR2 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RNF20Q5VTR2 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RNF20Q5VTR2 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RNF20Q5VTR2 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RNF20Q5VTR2 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
RNF20Q5VTR2 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
RNF20Q5VTR2 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.92■□□□□ 0.62
RNF20Q5VTR2 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RNF20Q5VTR2 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms