Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC067930.6-201ENST00000623257 4947 ntBASIC15.82■□□□□ 0.12
MSH3P20585 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.82■□□□□ 0.12
MSH3P20585 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.82■□□□□ 0.12
MSH3P20585 AL080243.2-201ENST00000418783 582 ntBASIC15.82■□□□□ 0.12
MSH3P20585 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.82■□□□□ 0.12
MSH3P20585 AC092580.3-201ENST00000430932 139 ntBASIC15.82■□□□□ 0.12
MSH3P20585 AC055876.3-201ENST00000431496 288 ntBASIC15.82■□□□□ 0.12
MSH3P20585 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC15.82■□□□□ 0.12
MSH3P20585 AC138649.4-201ENST00000612222 287 ntBASIC15.82■□□□□ 0.12
MSH3P20585 TEX28P1-201ENST00000613479 1221 ntBASIC15.82■□□□□ 0.12
MSH3P20585 TEX28P2-201ENST00000617764 1221 ntBASIC15.82■□□□□ 0.12
MSH3P20585 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
MSH3P20585 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
MSH3P20585 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.82■□□□□ 0.12
MSH3P20585 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.82■□□□□ 0.12
MSH3P20585 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.82■□□□□ 0.12
MSH3P20585 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.82■□□□□ 0.12
MSH3P20585 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSH3P20585 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
MSH3P20585 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.81■□□□□ 0.12
MSH3P20585 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
MSH3P20585 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.81■□□□□ 0.12
MSH3P20585 FO393414.2-201ENST00000405153 598 ntBASIC15.81■□□□□ 0.12
MSH3P20585 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.81■□□□□ 0.12
MSH3P20585 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.81■□□□□ 0.12
MSH3P20585 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.81■□□□□ 0.12
MSH3P20585 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.81■□□□□ 0.12
MSH3P20585 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.81■□□□□ 0.12
MSH3P20585 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.81■□□□□ 0.12
MSH3P20585 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.81■□□□□ 0.12
MSH3P20585 AL390754.1-201ENST00000619088 582 ntBASIC15.81■□□□□ 0.12
MSH3P20585 MIR6069-201ENST00000620069 79 ntBASIC15.81■□□□□ 0.12
MSH3P20585 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
MSH3P20585 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
MSH3P20585 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSH3P20585 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.8■□□□□ 0.12
MSH3P20585 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
MSH3P20585 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
MSH3P20585 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.8■□□□□ 0.12
MSH3P20585 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
MSH3P20585 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.8■□□□□ 0.12
MSH3P20585 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.8■□□□□ 0.12
MSH3P20585 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.8■□□□□ 0.12
MSH3P20585 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.8■□□□□ 0.12
MSH3P20585 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
MSH3P20585 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.8■□□□□ 0.12
MSH3P20585 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.8■□□□□ 0.12
MSH3P20585 BASP1P1-201ENST00000430708 665 ntBASIC15.8■□□□□ 0.12
MSH3P20585 AC241585.1-201ENST00000433527 519 ntBASIC15.8■□□□□ 0.12
MSH3P20585 EEF1DP4-201ENST00000446006 880 ntBASIC15.8■□□□□ 0.12
MSH3P20585 AC093214.1-201ENST00000511688 1107 ntBASIC15.8■□□□□ 0.12
MSH3P20585 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.8■□□□□ 0.12
MSH3P20585 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.8■□□□□ 0.12
MSH3P20585 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.8■□□□□ 0.12
MSH3P20585 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.8■□□□□ 0.12
MSH3P20585 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 AL450472.2-201ENST00000603663 1156 ntBASIC15.8■□□□□ 0.12
MSH3P20585 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.8■□□□□ 0.12
MSH3P20585 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MSH3P20585 AP003680.1-201ENST00000598970 3660 ntBASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms