Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
COL6A2P12110 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A2P12110 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.7■□□□□ 0.1
COL6A2P12110 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.7■□□□□ 0.1
COL6A2P12110 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.7■□□□□ 0.1
COL6A2P12110 KRT8P23-201ENST00000560090 1207 ntBASIC15.7■□□□□ 0.1
COL6A2P12110 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A2P12110 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.7■□□□□ 0.1
COL6A2P12110 AC027601.4-201ENST00000611259 610 ntBASIC15.7■□□□□ 0.1
COL6A2P12110 AC091812.2-201ENST00000619081 385 ntBASIC15.7■□□□□ 0.1
COL6A2P12110 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.7■□□□□ 0.1
COL6A2P12110 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.7■□□□□ 0.1
COL6A2P12110 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.7■□□□□ 0.1
COL6A2P12110 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A2P12110 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.7■□□□□ 0.1
COL6A2P12110 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A2P12110 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
COL6A2P12110 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A2P12110 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
COL6A2P12110 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A2P12110 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A2P12110 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A2P12110 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
COL6A2P12110 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
COL6A2P12110 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
COL6A2P12110 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A2P12110 KRT18P3-201ENST00000451602 1288 ntBASIC15.69■□□□□ 0.1
COL6A2P12110 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A2P12110 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
COL6A2P12110 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A2P12110 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A2P12110 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A2P12110 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.69■□□□□ 0.1
COL6A2P12110 AC243562.1-201ENST00000560672 389 ntBASIC15.69■□□□□ 0.1
COL6A2P12110 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.69■□□□□ 0.1
COL6A2P12110 AP000842.3-202ENST00000569238 1080 ntBASIC15.69■□□□□ 0.1
COL6A2P12110 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A2P12110 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A2P12110 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.69■□□□□ 0.1
COL6A2P12110 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
COL6A2P12110 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A2P12110 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
COL6A2P12110 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
COL6A2P12110 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.69■□□□□ 0.1
COL6A2P12110 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
COL6A2P12110 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.69■□□□□ 0.1
COL6A2P12110 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A2P12110 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A2P12110 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL6A2P12110 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A2P12110 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A2P12110 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A2P12110 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL6A2P12110 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.68■□□□□ 0.1
COL6A2P12110 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A2P12110 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A2P12110 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL6A2P12110 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A2P12110 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms