Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.34■□□□□ 0.05
HOXC4P09017 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.34■□□□□ 0.05
HOXC4P09017 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
HOXC4P09017 IGHV3-71-201ENST00000523324 359 ntBASIC15.34■□□□□ 0.05
HOXC4P09017 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.34■□□□□ 0.05
HOXC4P09017 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.34■□□□□ 0.05
HOXC4P09017 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.34■□□□□ 0.05
HOXC4P09017 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.34■□□□□ 0.05
HOXC4P09017 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC15.34■□□□□ 0.05
HOXC4P09017 AC017083.2-201ENST00000608069 979 ntBASIC15.34■□□□□ 0.05
HOXC4P09017 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.34■□□□□ 0.05
HOXC4P09017 AC005252.2-201ENST00000624630 1141 ntBASIC15.34■□□□□ 0.05
HOXC4P09017 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.34■□□□□ 0.05
HOXC4P09017 AL645728.2-202ENST00000641679 227 ntBASIC15.34■□□□□ 0.05
HOXC4P09017 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
HOXC4P09017 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.34■□□□□ 0.05
HOXC4P09017 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.34■□□□□ 0.05
HOXC4P09017 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.34■□□□□ 0.05
HOXC4P09017 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.34■□□□□ 0.05
HOXC4P09017 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.34■□□□□ 0.05
HOXC4P09017 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
HOXC4P09017 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.34■□□□□ 0.05
HOXC4P09017 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.34■□□□□ 0.05
HOXC4P09017 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
HOXC4P09017 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
HOXC4P09017 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC4P09017 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
HOXC4P09017 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC4P09017 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
HOXC4P09017 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC4P09017 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC4P09017 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC4P09017 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.33■□□□□ 0.05
HOXC4P09017 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC4P09017 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.33■□□□□ 0.05
HOXC4P09017 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.33■□□□□ 0.05
HOXC4P09017 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.33■□□□□ 0.04
HOXC4P09017 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC4P09017 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
HOXC4P09017 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 BAATP1-201ENST00000412284 1225 ntBASIC15.33■□□□□ 0.04
HOXC4P09017 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.33■□□□□ 0.04
HOXC4P09017 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.33■□□□□ 0.04
HOXC4P09017 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.33■□□□□ 0.04
HOXC4P09017 AC068587.3-201ENST00000526613 355 ntBASIC15.33■□□□□ 0.04
HOXC4P09017 HILS1-202ENST00000545329 423 ntBASIC15.33■□□□□ 0.04
HOXC4P09017 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
HOXC4P09017 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.33■□□□□ 0.04
HOXC4P09017 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC4P09017 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.33■□□□□ 0.04
HOXC4P09017 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC4P09017 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
HOXC4P09017 AL512343.1-201ENST00000605837 169 ntBASIC15.33■□□□□ 0.04
HOXC4P09017 AL022328.1-201ENST00000610050 478 ntBASIC15.33■□□□□ 0.04
HOXC4P09017 MIR6752-201ENST00000618442 71 ntBASIC15.33■□□□□ 0.04
HOXC4P09017 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.33■□□□□ 0.04
HOXC4P09017 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
HOXC4P09017 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
HOXC4P09017 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC4P09017 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
HOXC4P09017 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC4P09017 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC4P09017 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
HOXC4P09017 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 PCDHB19P-201ENST00000570871 2371 ntBASIC15.32■□□□□ 0.04
HOXC4P09017 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
HOXC4P09017 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC4P09017 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.32■□□□□ 0.04
HOXC4P09017 AC093433.1-201ENST00000458048 571 ntBASIC15.32■□□□□ 0.04
HOXC4P09017 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC4P09017 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms