Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DOAP06340 LTB4R2-202ENST00000528054 3092 ntBASIC18.59■□□□□ 0.57
HLA-DOAP06340 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DOAP06340 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DOAP06340 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HLA-DOAP06340 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.58■□□□□ 0.57
HLA-DOAP06340 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
HLA-DOAP06340 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.58■□□□□ 0.57
HLA-DOAP06340 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
HLA-DOAP06340 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DOAP06340 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
HLA-DOAP06340 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
HLA-DOAP06340 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DOAP06340 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DOAP06340 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DOAP06340 AC069224.1-201ENST00000566372 1715 ntBASIC18.58■□□□□ 0.57
HLA-DOAP06340 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DOAP06340 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DOAP06340 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DOAP06340 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DOAP06340 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DOAP06340 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 AP005482.1-201ENST00000563722 1273 ntBASIC18.58■□□□□ 0.56
HLA-DOAP06340 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 AL022328.1-201ENST00000610050 478 ntBASIC18.58■□□□□ 0.56
HLA-DOAP06340 AC133552.6-201ENST00000613406 534 ntBASIC18.58■□□□□ 0.56
HLA-DOAP06340 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DOAP06340 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DOAP06340 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DOAP06340 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
HLA-DOAP06340 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DOAP06340 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
HLA-DOAP06340 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DOAP06340 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DOAP06340 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DOAP06340 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 RPS2P32-201ENST00000439199 892 ntBASIC18.57■□□□□ 0.56
HLA-DOAP06340 AC068587.3-201ENST00000526613 355 ntBASIC18.57■□□□□ 0.56
HLA-DOAP06340 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 AC009486.1-201ENST00000569860 813 ntBASIC18.57■□□□□ 0.56
HLA-DOAP06340 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.57■□□□□ 0.56
HLA-DOAP06340 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DOAP06340 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DOAP06340 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DOAP06340 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DOAP06340 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DOAP06340 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DOAP06340 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.57■□□□□ 0.56
HLA-DOAP06340 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 AC124067.4-201ENST00000519691 2379 ntBASIC18.56■□□□□ 0.56
HLA-DOAP06340 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DOAP06340 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.56■□□□□ 0.56
HLA-DOAP06340 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms