Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 AC093724.1-201ENST00000448659 1027 ntBASIC15.89■□□□□ 0.13
SHOX2O60902 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC15.89■□□□□ 0.13
SHOX2O60902 AC005412.3-201ENST00000580309 715 ntBASIC15.89■□□□□ 0.13
SHOX2O60902 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.89■□□□□ 0.13
SHOX2O60902 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.89■□□□□ 0.13
SHOX2O60902 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.89■□□□□ 0.13
SHOX2O60902 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
SHOX2O60902 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.89■□□□□ 0.13
SHOX2O60902 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SHOX2O60902 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.89■□□□□ 0.13
SHOX2O60902 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
SHOX2O60902 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.88■□□□□ 0.13
SHOX2O60902 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.88■□□□□ 0.13
SHOX2O60902 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
SHOX2O60902 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 GUK1-204ENST00000366721 689 ntTSL 3 BASIC15.88■□□□□ 0.13
SHOX2O60902 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
SHOX2O60902 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC15.88■□□□□ 0.13
SHOX2O60902 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.88■□□□□ 0.13
SHOX2O60902 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 AP005901.3-202ENST00000581653 237 ntBASIC15.88■□□□□ 0.13
SHOX2O60902 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.88■□□□□ 0.13
SHOX2O60902 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
SHOX2O60902 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.88■□□□□ 0.13
SHOX2O60902 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.88■□□□□ 0.13
SHOX2O60902 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
SHOX2O60902 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC15.88■□□□□ 0.13
SHOX2O60902 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC15.88■□□□□ 0.13
SHOX2O60902 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.88■□□□□ 0.13
SHOX2O60902 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.88■□□□□ 0.13
SHOX2O60902 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.88■□□□□ 0.13
SHOX2O60902 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SHOX2O60902 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
SHOX2O60902 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
SHOX2O60902 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
SHOX2O60902 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.87■□□□□ 0.13
SHOX2O60902 AL591122.2-201ENST00000624125 1853 ntBASIC15.87■□□□□ 0.13
SHOX2O60902 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SHOX2O60902 RCN1P1-201ENST00000400413 996 ntBASIC15.87■□□□□ 0.13
SHOX2O60902 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms