Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 DUX4L47-201ENST00000566374 394 ntBASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK3Q9BYB0 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 AL645937.2-201ENST00000396808 931 ntBASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 RN7SKP175-201ENST00000408472 289 ntBASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC20.03■□□□□ 0.8
SHANK3Q9BYB0 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 AC244157.2-201ENST00000616239 1006 ntBASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHANK3Q9BYB0 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 HLA-DQB2-229ENST00000411527 1059 ntBASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 AC116345.2-201ENST00000512837 523 ntBASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.02■□□□□ 0.79
SHANK3Q9BYB0 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 PARVG-202ENST00000415224 999 ntTSL 2 BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 AC114501.1-201ENST00000445949 172 ntBASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 RERG-205ENST00000537647 935 ntTSL 2 BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK3Q9BYB0 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHANK3Q9BYB0 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 UFM1-202ENST00000379649 846 ntTSL 4 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 PDIA3P2-201ENST00000428073 158 ntBASIC20■□□□□ 0.79
SHANK3Q9BYB0 RN7SL769P-201ENST00000469386 295 ntBASIC20■□□□□ 0.79
SHANK3Q9BYB0 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHANK3Q9BYB0 AC103988.2-201ENST00000561804 725 ntBASIC20■□□□□ 0.79
SHANK3Q9BYB0 AL133499.1-201ENST00000596207 608 ntBASIC20■□□□□ 0.79
SHANK3Q9BYB0 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
SHANK3Q9BYB0 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms