Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.47■□□□□ 0.23
PTPN9P43378 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN9P43378 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.47■□□□□ 0.23
PTPN9P43378 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
PTPN9P43378 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN9P43378 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
PTPN9P43378 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.47■□□□□ 0.23
PTPN9P43378 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.47■□□□□ 0.23
PTPN9P43378 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.46■□□□□ 0.23
PTPN9P43378 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN9P43378 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.46■□□□□ 0.23
PTPN9P43378 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN9P43378 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN9P43378 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN9P43378 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.46■□□□□ 0.23
PTPN9P43378 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.46■□□□□ 0.23
PTPN9P43378 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.46■□□□□ 0.23
PTPN9P43378 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.46■□□□□ 0.23
PTPN9P43378 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.46■□□□□ 0.23
PTPN9P43378 AC009477.1-201ENST00000452936 217 ntBASIC16.46■□□□□ 0.23
PTPN9P43378 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
PTPN9P43378 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.46■□□□□ 0.23
PTPN9P43378 SLED1-202ENST00000512051 380 ntBASIC16.46■□□□□ 0.23
PTPN9P43378 IGHV3-42-201ENST00000520410 361 ntBASIC16.46■□□□□ 0.23
PTPN9P43378 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.46■□□□□ 0.23
PTPN9P43378 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.46■□□□□ 0.23
PTPN9P43378 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PTPN9P43378 AC106028.4-201ENST00000614509 607 ntBASIC16.46■□□□□ 0.23
PTPN9P43378 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.46■□□□□ 0.23
PTPN9P43378 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PTPN9P43378 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PTPN9P43378 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.46■□□□□ 0.23
PTPN9P43378 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.46■□□□□ 0.23
PTPN9P43378 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.46■□□□□ 0.23
PTPN9P43378 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTPN9P43378 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
PTPN9P43378 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.46■□□□□ 0.22
PTPN9P43378 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
PTPN9P43378 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PTPN9P43378 AC087481.3-201ENST00000602886 1894 ntBASIC16.46■□□□□ 0.22
PTPN9P43378 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
PTPN9P43378 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PTPN9P43378 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
PTPN9P43378 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
PTPN9P43378 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
PTPN9P43378 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PTPN9P43378 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
PTPN9P43378 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 AC009090.5-201ENST00000624886 2285 ntBASIC16.45■□□□□ 0.22
PTPN9P43378 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN9P43378 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.45■□□□□ 0.22
PTPN9P43378 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN9P43378 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN9P43378 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN9P43378 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.45■□□□□ 0.22
PTPN9P43378 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.45■□□□□ 0.22
PTPN9P43378 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.45■□□□□ 0.22
PTPN9P43378 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.45■□□□□ 0.22
PTPN9P43378 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
PTPN9P43378 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.45■□□□□ 0.22
PTPN9P43378 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.45■□□□□ 0.22
PTPN9P43378 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.45■□□□□ 0.22
PTPN9P43378 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.45■□□□□ 0.22
PTPN9P43378 AL390955.2-201ENST00000603032 514 ntBASIC16.45■□□□□ 0.22
PTPN9P43378 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTPN9P43378 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.45■□□□□ 0.22
PTPN9P43378 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.45■□□□□ 0.22
PTPN9P43378 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms