Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTDNEP1O95476 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CTDNEP1O95476 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTDNEP1O95476 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTDNEP1O95476 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTDNEP1O95476 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTDNEP1O95476 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.32■□□□□ 0.52
CTDNEP1O95476 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CTDNEP1O95476 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTDNEP1O95476 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTDNEP1O95476 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTDNEP1O95476 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTDNEP1O95476 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.32■□□□□ 0.52
CTDNEP1O95476 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CTDNEP1O95476 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 AL645939.2-201ENST00000427340 991 ntBASIC18.31■□□□□ 0.52
CTDNEP1O95476 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 AF228730.6-201ENST00000641497 218 ntBASIC18.31■□□□□ 0.52
CTDNEP1O95476 AC084121.3-201ENST00000641716 218 ntBASIC18.31■□□□□ 0.52
CTDNEP1O95476 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTDNEP1O95476 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.31■□□□□ 0.52
CTDNEP1O95476 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 RPL13P2-201ENST00000440687 659 ntBASIC18.3■□□□□ 0.52
CTDNEP1O95476 CNN2P2-201ENST00000443536 909 ntBASIC18.3■□□□□ 0.52
CTDNEP1O95476 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 CNN2P3-201ENST00000450201 906 ntBASIC18.3■□□□□ 0.52
CTDNEP1O95476 KLF2P3-201ENST00000451977 1087 ntBASIC18.3■□□□□ 0.52
CTDNEP1O95476 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 AC004449.1-201ENST00000564240 433 ntBASIC18.3■□□□□ 0.52
CTDNEP1O95476 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 LINC01115-203ENST00000606068 577 ntBASIC18.3■□□□□ 0.52
CTDNEP1O95476 AL136317.3-201ENST00000618497 906 ntBASIC18.3■□□□□ 0.52
CTDNEP1O95476 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 AC023824.1-201ENST00000562945 2975 ntBASIC18.3■□□□□ 0.52
CTDNEP1O95476 AC011270.2-201ENST00000624293 2550 ntBASIC18.3■□□□□ 0.52
CTDNEP1O95476 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTDNEP1O95476 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CTDNEP1O95476 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.29■□□□□ 0.52
CTDNEP1O95476 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CTDNEP1O95476 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms