Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.63■□□□□ 0.09
VPS4BO75351 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
VPS4BO75351 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.63■□□□□ 0.09
VPS4BO75351 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.63■□□□□ 0.09
VPS4BO75351 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 MIR4321-201ENST00000592276 80 ntBASIC15.63■□□□□ 0.09
VPS4BO75351 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.63■□□□□ 0.09
VPS4BO75351 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.63■□□□□ 0.09
VPS4BO75351 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.63■□□□□ 0.09
VPS4BO75351 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.63■□□□□ 0.09
VPS4BO75351 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 AC136621.1-201ENST00000624017 2304 ntBASIC15.63■□□□□ 0.09
VPS4BO75351 AC006486.2-201ENST00000624246 2199 ntBASIC15.63■□□□□ 0.09
VPS4BO75351 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.63■□□□□ 0.09
VPS4BO75351 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
VPS4BO75351 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
VPS4BO75351 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.63■□□□□ 0.09
VPS4BO75351 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
VPS4BO75351 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
VPS4BO75351 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
VPS4BO75351 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
VPS4BO75351 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.63■□□□□ 0.09
VPS4BO75351 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
VPS4BO75351 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.62■□□□□ 0.09
VPS4BO75351 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
VPS4BO75351 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.62■□□□□ 0.09
VPS4BO75351 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
VPS4BO75351 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.62■□□□□ 0.09
VPS4BO75351 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
VPS4BO75351 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.62■□□□□ 0.09
VPS4BO75351 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.62■□□□□ 0.09
VPS4BO75351 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 AC005237.2-201ENST00000434368 219 ntBASIC15.62■□□□□ 0.09
VPS4BO75351 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.62■□□□□ 0.09
VPS4BO75351 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.62■□□□□ 0.09
VPS4BO75351 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.62■□□□□ 0.09
VPS4BO75351 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.62■□□□□ 0.09
VPS4BO75351 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.62■□□□□ 0.09
VPS4BO75351 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.62■□□□□ 0.09
VPS4BO75351 AL009183.1-201ENST00000603760 355 ntBASIC15.62■□□□□ 0.09
VPS4BO75351 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.62■□□□□ 0.09
VPS4BO75351 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
VPS4BO75351 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
VPS4BO75351 AC126755.1-201ENST00000525846 6405 ntBASIC15.62■□□□□ 0.09
VPS4BO75351 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.62■□□□□ 0.09
VPS4BO75351 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
VPS4BO75351 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.62■□□□□ 0.09
VPS4BO75351 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.62■□□□□ 0.09
VPS4BO75351 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS4BO75351 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.61■□□□□ 0.09
VPS4BO75351 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.61■□□□□ 0.09
VPS4BO75351 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 AL109954.1-202ENST00000564051 2148 ntBASIC15.61■□□□□ 0.09
VPS4BO75351 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS4BO75351 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
VPS4BO75351 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms