Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
NPHP4O75161 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP4O75161 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP4O75161 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC21.81■■□□□ 1.08
NPHP4O75161 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NPHP4O75161 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC21.8■■□□□ 1.08
NPHP4O75161 IGHV3-37-201ENST00000518544 340 ntBASIC21.8■■□□□ 1.08
NPHP4O75161 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC21.8■■□□□ 1.08
NPHP4O75161 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC21.8■■□□□ 1.08
NPHP4O75161 IRF3-215ENST00000596822 823 ntTSL 3 BASIC21.8■■□□□ 1.08
NPHP4O75161 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC21.8■■□□□ 1.08
NPHP4O75161 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 AC005915.1-201ENST00000624912 2018 ntBASIC21.8■■□□□ 1.08
NPHP4O75161 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
NPHP4O75161 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.8■■□□□ 1.08
NPHP4O75161 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 AC078925.2-201ENST00000624013 1973 ntBASIC21.8■■□□□ 1.08
NPHP4O75161 TBC1D3J-201ENST00000620719 1426 ntBASIC21.8■■□□□ 1.08
NPHP4O75161 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
NPHP4O75161 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
NPHP4O75161 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC21.8■■□□□ 1.08
NPHP4O75161 AL645937.2-201ENST00000396808 931 ntBASIC21.8■■□□□ 1.08
NPHP4O75161 PUDPP3-201ENST00000445368 636 ntBASIC21.8■■□□□ 1.08
NPHP4O75161 RPL18P13-201ENST00000478088 569 ntBASIC21.8■■□□□ 1.08
NPHP4O75161 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NPHP4O75161 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC21.8■■□□□ 1.08
NPHP4O75161 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC21.8■■□□□ 1.08
NPHP4O75161 AC242376.2-201ENST00000619355 883 ntBASIC21.8■■□□□ 1.08
NPHP4O75161 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC21.8■■□□□ 1.08
NPHP4O75161 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 AC141586.5-201ENST00000624546 2050 ntBASIC21.79■■□□□ 1.08
NPHP4O75161 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP4O75161 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
NPHP4O75161 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
NPHP4O75161 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC21.79■■□□□ 1.08
NPHP4O75161 RN7SKP214-201ENST00000364208 315 ntBASIC21.79■■□□□ 1.08
NPHP4O75161 HNRNPA1P41-201ENST00000397777 928 ntBASIC21.79■■□□□ 1.08
NPHP4O75161 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 RCC2P8-201ENST00000502779 1035 ntBASIC21.79■■□□□ 1.08
NPHP4O75161 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NPHP4O75161 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
NPHP4O75161 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP4O75161 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC21.79■■□□□ 1.08
NPHP4O75161 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC21.79■■□□□ 1.08
NPHP4O75161 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC21.79■■□□□ 1.08
NPHP4O75161 AC138894.2-201ENST00000602838 371 ntBASIC21.79■■□□□ 1.08
NPHP4O75161 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
NPHP4O75161 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.79■■□□□ 1.08
NPHP4O75161 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHP4O75161 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP4O75161 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP4O75161 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
NPHP4O75161 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHP4O75161 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP4O75161 NOC2LP2-201ENST00000407594 1944 ntBASIC21.78■■□□□ 1.08
NPHP4O75161 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP4O75161 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHP4O75161 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC21.78■■□□□ 1.08
NPHP4O75161 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC21.78■■□□□ 1.08
NPHP4O75161 DNM1P30-201ENST00000563586 452 ntBASIC21.78■■□□□ 1.08
NPHP4O75161 AC009955.4-201ENST00000597192 544 ntBASIC21.78■■□□□ 1.08
NPHP4O75161 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 AL136295.7-201ENST00000619226 1200 ntBASIC21.78■■□□□ 1.08
NPHP4O75161 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 MFF-204ENST00000353339 2186 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC21.78■■□□□ 1.08
NPHP4O75161 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPHP4O75161 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
NPHP4O75161 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHP4O75161 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms