Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
AP4E1Q9UPM8 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 AC051619.7-201ENST00000568314 623 ntBASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 AC097359.3-201ENST00000603982 1210 ntBASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
AP4E1Q9UPM8 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 RPL37AP1-201ENST00000412502 279 ntBASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 AC107890.1-201ENST00000422478 521 ntBASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 FAM86GP-201ENST00000448322 971 ntBASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 HLA-V-204ENST00000476601 1289 ntBASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 AC067863.1-201ENST00000494933 530 ntBASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 GPALPP1-207ENST00000611650 899 ntBASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 FO538757.1-201ENST00000623083 1397 ntBASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.48■□□□□ 0.23
AP4E1Q9UPM8 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.47■□□□□ 0.23
AP4E1Q9UPM8 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms