Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC17.81■□□□□ 0.44
COL20A1Q9P218 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC17.81■□□□□ 0.44
COL20A1Q9P218 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.81■□□□□ 0.44
COL20A1Q9P218 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
COL20A1Q9P218 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.81■□□□□ 0.44
COL20A1Q9P218 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
COL20A1Q9P218 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL20A1Q9P218 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
COL20A1Q9P218 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
COL20A1Q9P218 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL20A1Q9P218 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
COL20A1Q9P218 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 RPL13AP25-201ENST00000484130 612 ntBASIC17.8■□□□□ 0.44
COL20A1Q9P218 GAPDHP40-201ENST00000505218 1006 ntBASIC17.8■□□□□ 0.44
COL20A1Q9P218 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 ENPP7P5-201ENST00000541031 1031 ntBASIC17.8■□□□□ 0.44
COL20A1Q9P218 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 AC107373.2-201ENST00000607735 490 ntBASIC17.8■□□□□ 0.44
COL20A1Q9P218 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
COL20A1Q9P218 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL20A1Q9P218 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 AP001889.1-201ENST00000525414 633 ntBASIC17.79■□□□□ 0.44
COL20A1Q9P218 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 MIR6805-201ENST00000615055 62 ntBASIC17.79■□□□□ 0.44
COL20A1Q9P218 MIR6752-201ENST00000618442 71 ntBASIC17.79■□□□□ 0.44
COL20A1Q9P218 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.79■□□□□ 0.44
COL20A1Q9P218 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL20A1Q9P218 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL20A1Q9P218 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
COL20A1Q9P218 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms