Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 AGAP7P-201ENST00000582299 2062 ntBASIC14.58□□□□□ -0.08
CLN6Q9NWW5 AGAP14-201ENST00000624701 2060 ntBASIC14.58□□□□□ -0.08
CLN6Q9NWW5 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 AC093724.1-201ENST00000448659 1027 ntBASIC14.58□□□□□ -0.08
CLN6Q9NWW5 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 AC091304.2-201ENST00000564639 760 ntBASIC14.58□□□□□ -0.08
CLN6Q9NWW5 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CLN6Q9NWW5 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 RNU1-129P-201ENST00000384064 167 ntBASIC14.57□□□□□ -0.08
CLN6Q9NWW5 AC073621.1-201ENST00000392730 636 ntBASIC14.57□□□□□ -0.08
CLN6Q9NWW5 HIST2H3DP1-201ENST00000401004 416 ntBASIC14.57□□□□□ -0.08
CLN6Q9NWW5 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 TSPY19P-201ENST00000418461 509 ntBASIC14.57□□□□□ -0.08
CLN6Q9NWW5 TSPY18P-201ENST00000441642 509 ntBASIC14.57□□□□□ -0.08
CLN6Q9NWW5 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 KRT18P35-201ENST00000510488 1269 ntBASIC14.57□□□□□ -0.08
CLN6Q9NWW5 AC136632.2-201ENST00000512891 861 ntBASIC14.57□□□□□ -0.08
CLN6Q9NWW5 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 U1.21-201ENST00000580816 167 ntBASIC14.57□□□□□ -0.08
CLN6Q9NWW5 AC008667.4-201ENST00000607370 168 ntBASIC14.57□□□□□ -0.08
CLN6Q9NWW5 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.57□□□□□ -0.08
CLN6Q9NWW5 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLN6Q9NWW5 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.56□□□□□ -0.08
CLN6Q9NWW5 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.56□□□□□ -0.08
CLN6Q9NWW5 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.56□□□□□ -0.08
CLN6Q9NWW5 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms