Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NIPAL3Q6P499 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NIPAL3Q6P499 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.53□□□□□ -0.08
NIPAL3Q6P499 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NIPAL3Q6P499 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
NIPAL3Q6P499 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
NIPAL3Q6P499 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.53□□□□□ -0.08
NIPAL3Q6P499 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.52□□□□□ -0.08
NIPAL3Q6P499 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 AC073389.1-201ENST00000595595 795 ntBASIC14.52□□□□□ -0.09
NIPAL3Q6P499 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 AC055717.3-201ENST00000622967 595 ntBASIC14.52□□□□□ -0.09
NIPAL3Q6P499 AL513210.1-201ENST00000629608 234 ntBASIC14.52□□□□□ -0.09
NIPAL3Q6P499 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 AC134684.3-201ENST00000641758 218 ntBASIC14.52□□□□□ -0.09
NIPAL3Q6P499 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 AC087481.3-201ENST00000602886 1894 ntBASIC14.52□□□□□ -0.09
NIPAL3Q6P499 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NIPAL3Q6P499 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AP002414.2-201ENST00000591780 3365 ntBASIC14.51□□□□□ -0.09
NIPAL3Q6P499 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 NORAD-201ENST00000565493 5339 ntBASIC14.51□□□□□ -0.09
NIPAL3Q6P499 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AC004461.1-201ENST00000412461 403 ntBASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 RPS8P6-201ENST00000426177 609 ntBASIC14.51□□□□□ -0.09
NIPAL3Q6P499 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AC004967.1-201ENST00000453589 447 ntBASIC14.51□□□□□ -0.09
NIPAL3Q6P499 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AC069335.1-201ENST00000489972 472 ntBASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AP000344.2-201ENST00000512987 629 ntBASIC14.51□□□□□ -0.09
NIPAL3Q6P499 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 KRT8P23-201ENST00000560090 1207 ntBASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AP000842.3-202ENST00000569238 1080 ntBASIC14.51□□□□□ -0.09
NIPAL3Q6P499 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AC004835.2-201ENST00000603762 682 ntBASIC14.51□□□□□ -0.09
NIPAL3Q6P499 AL365330.1-201ENST00000607459 531 ntBASIC14.51□□□□□ -0.09
NIPAL3Q6P499 SPTSSB-204ENST00000617024 1292 ntBASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms