Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CLDN6P56747 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLDN6P56747 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLDN6P56747 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLDN6P56747 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CLDN6P56747 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CLDN6P56747 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLDN6P56747 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLDN6P56747 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLDN6P56747 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLDN6P56747 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLDN6P56747 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.22■□□□□ 0.03
CLDN6P56747 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
CLDN6P56747 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLDN6P56747 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLDN6P56747 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLDN6P56747 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.22■□□□□ 0.03
CLDN6P56747 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.21■□□□□ 0.03
CLDN6P56747 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 AC134312.5-201ENST00000568031 1313 ntBASIC15.21■□□□□ 0.03
CLDN6P56747 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CLDN6P56747 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.21■□□□□ 0.03
CLDN6P56747 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CLDN6P56747 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.21■□□□□ 0.03
CLDN6P56747 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CLDN6P56747 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.21■□□□□ 0.03
CLDN6P56747 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.21■□□□□ 0.03
CLDN6P56747 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.21■□□□□ 0.03
CLDN6P56747 YBX1P6-201ENST00000442962 1002 ntBASIC15.21■□□□□ 0.03
CLDN6P56747 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.21■□□□□ 0.03
CLDN6P56747 PFN1P12-201ENST00000455938 534 ntBASIC15.21■□□□□ 0.03
CLDN6P56747 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
CLDN6P56747 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.21■□□□□ 0.03
CLDN6P56747 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.21■□□□□ 0.03
CLDN6P56747 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC15.21■□□□□ 0.03
CLDN6P56747 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.21■□□□□ 0.03
CLDN6P56747 AC120045.2-201ENST00000567334 178 ntBASIC15.21■□□□□ 0.03
CLDN6P56747 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.21■□□□□ 0.03
CLDN6P56747 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.21■□□□□ 0.03
CLDN6P56747 RN7SL560P-201ENST00000577943 264 ntBASIC15.21■□□□□ 0.03
CLDN6P56747 AL021578.1-201ENST00000613646 709 ntBASIC15.21■□□□□ 0.03
CLDN6P56747 AC005252.2-201ENST00000624630 1141 ntBASIC15.21■□□□□ 0.03
CLDN6P56747 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.21■□□□□ 0.03
CLDN6P56747 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLDN6P56747 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLDN6P56747 AC005052.1-201ENST00000625181 2492 ntBASIC15.21■□□□□ 0.02
CLDN6P56747 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLDN6P56747 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLDN6P56747 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.21■□□□□ 0.02
CLDN6P56747 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
CLDN6P56747 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLDN6P56747 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
CLDN6P56747 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.21■□□□□ 0.02
CLDN6P56747 AC079328.2-201ENST00000561241 3354 ntBASIC15.21■□□□□ 0.02
CLDN6P56747 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
CLDN6P56747 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.2■□□□□ 0.02
CLDN6P56747 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.2■□□□□ 0.02
CLDN6P56747 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLDN6P56747 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLDN6P56747 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLDN6P56747 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLDN6P56747 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLDN6P56747 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.2■□□□□ 0.02
CLDN6P56747 BNIP3P1-202ENST00000550043 1585 ntBASIC15.2■□□□□ 0.02
CLDN6P56747 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLDN6P56747 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLDN6P56747 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CLDN6P56747 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
CLDN6P56747 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
CLDN6P56747 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
CLDN6P56747 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.2■□□□□ 0.02
CLDN6P56747 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.2■□□□□ 0.02
CLDN6P56747 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.2■□□□□ 0.02
CLDN6P56747 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLDN6P56747 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLDN6P56747 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.2■□□□□ 0.02
CLDN6P56747 MIR326-201ENST00000362220 95 ntBASIC15.2■□□□□ 0.02
CLDN6P56747 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
CLDN6P56747 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLDN6P56747 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.2■□□□□ 0.02
CLDN6P56747 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.2■□□□□ 0.02
CLDN6P56747 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.2■□□□□ 0.02
CLDN6P56747 AC093433.1-201ENST00000458048 571 ntBASIC15.2■□□□□ 0.02
CLDN6P56747 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.2■□□□□ 0.02
CLDN6P56747 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.2■□□□□ 0.02
CLDN6P56747 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms