Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 FUOM-202ENST00000368551 628 ntTSL 3 BASIC12.02□□□□□ -0.49
FOXA3P55318 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC12.02□□□□□ -0.49
FOXA3P55318 RCN1P2-201ENST00000398357 915 ntBASIC12.02□□□□□ -0.49
FOXA3P55318 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC12.02□□□□□ -0.49
FOXA3P55318 AC087163.2-201ENST00000457299 853 ntBASIC12.02□□□□□ -0.49
FOXA3P55318 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC12.02□□□□□ -0.49
FOXA3P55318 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC12.02□□□□□ -0.49
FOXA3P55318 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC12.02□□□□□ -0.49
FOXA3P55318 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC12.02□□□□□ -0.49
FOXA3P55318 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
FOXA3P55318 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC12.02□□□□□ -0.49
FOXA3P55318 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
FOXA3P55318 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC12.02□□□□□ -0.49
FOXA3P55318 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC12.02□□□□□ -0.49
FOXA3P55318 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.02□□□□□ -0.49
FOXA3P55318 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC12.02□□□□□ -0.49
FOXA3P55318 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC12.02□□□□□ -0.49
FOXA3P55318 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
FOXA3P55318 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA3P55318 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
FOXA3P55318 AC126365.1-201ENST00000578585 1514 ntBASIC12.01□□□□□ -0.49
FOXA3P55318 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
FOXA3P55318 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 C18orf15-201ENST00000623680 2534 ntBASIC12.01□□□□□ -0.49
FOXA3P55318 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC12.01□□□□□ -0.49
FOXA3P55318 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.01□□□□□ -0.49
FOXA3P55318 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA3P55318 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
FOXA3P55318 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
FOXA3P55318 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
FOXA3P55318 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.01□□□□□ -0.49
FOXA3P55318 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
FOXA3P55318 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
FOXA3P55318 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
FOXA3P55318 HCG4-201ENST00000418983 998 ntBASIC12.01□□□□□ -0.49
FOXA3P55318 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA3P55318 STARD13-205ENST00000439831 945 ntTSL 2 BASIC12.01□□□□□ -0.49
FOXA3P55318 ABCD1P5-201ENST00000445663 754 ntBASIC12.01□□□□□ -0.49
FOXA3P55318 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
FOXA3P55318 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
FOXA3P55318 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC12.01□□□□□ -0.49
FOXA3P55318 LINC01230-201ENST00000625222 3017 ntBASIC12.01□□□□□ -0.49
FOXA3P55318 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC12.01□□□□□ -0.49
FOXA3P55318 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
FOXA3P55318 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
FOXA3P55318 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
FOXA3P55318 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms