Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
HMGB1P09429 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGB1P09429 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 TUBB3P1-201ENST00000405796 1332 ntBASIC18.73■□□□□ 0.59
HMGB1P09429 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB1P09429 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
HMGB1P09429 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
HMGB1P09429 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 FO538757.1-201ENST00000623083 1397 ntBASIC18.72■□□□□ 0.59
HMGB1P09429 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.72■□□□□ 0.59
HMGB1P09429 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGB1P09429 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HMGB1P09429 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGB1P09429 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.72■□□□□ 0.59
HMGB1P09429 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.72■□□□□ 0.59
HMGB1P09429 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGB1P09429 AC004449.1-201ENST00000564240 433 ntBASIC18.72■□□□□ 0.59
HMGB1P09429 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.72■□□□□ 0.59
HMGB1P09429 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
HMGB1P09429 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB1P09429 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB1P09429 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB1P09429 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB1P09429 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.72■□□□□ 0.59
HMGB1P09429 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
HMGB1P09429 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB1P09429 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
HMGB1P09429 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB1P09429 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.71■□□□□ 0.59
HMGB1P09429 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.71■□□□□ 0.59
HMGB1P09429 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGB1P09429 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
HMGB1P09429 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGB1P09429 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGB1P09429 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
HMGB1P09429 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HMGB1P09429 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HMGB1P09429 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.71■□□□□ 0.59
HMGB1P09429 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.71■□□□□ 0.59
HMGB1P09429 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.71■□□□□ 0.59
HMGB1P09429 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.71■□□□□ 0.59
HMGB1P09429 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.71■□□□□ 0.59
HMGB1P09429 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.71■□□□□ 0.59
HMGB1P09429 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HMGB1P09429 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HMGB1P09429 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.58
HMGB1P09429 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.71■□□□□ 0.58
HMGB1P09429 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.7■□□□□ 0.58
HMGB1P09429 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.7■□□□□ 0.58
HMGB1P09429 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
HMGB1P09429 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HMGB1P09429 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
HMGB1P09429 PPT1-215ENST00000641471 2368 ntBASIC18.7■□□□□ 0.58
HMGB1P09429 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms