Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 KRT8P44-201ENST00000441609 1350 ntBASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 EEF1DP4-201ENST00000446006 880 ntBASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 PHKG1P2-201ENST00000457537 863 ntBASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 IGHV3-62-201ENST00000520057 340 ntBASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 AC040169.1-201ENST00000565382 521 ntBASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 UXT-AS1-201ENST00000590504 1525 ntBASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TCRBV7S3A2A0A539 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 AL139010.1-201ENST00000454878 894 ntBASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 HNRNPUP1-201ENST00000554987 333 ntBASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 C20orf181-201ENST00000623918 480 ntBASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 AC084121.4-201ENST00000641598 221 ntBASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 AF228730.8-201ENST00000642140 221 ntBASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 AC106881.1-201ENST00000605849 3329 ntBASIC16.16■□□□□ 0.18
TCRBV7S3A2A0A539 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TCRBV7S3A2A0A539 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms