Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CNTN3Q9P232 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.05■□□□□ 0.32
CNTN3Q9P232 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 AC011270.2-201ENST00000624293 2550 ntBASIC17.04■□□□□ 0.32
CNTN3Q9P232 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 AP006294.1-201ENST00000415407 339 ntBASIC17.04■□□□□ 0.32
CNTN3Q9P232 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CNTN3Q9P232 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.04■□□□□ 0.32
CNTN3Q9P232 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
CNTN3Q9P232 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CNTN3Q9P232 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.02■□□□□ 0.32
CNTN3Q9P232 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CNTN3Q9P232 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CNTN3Q9P232 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CNTN3Q9P232 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
CNTN3Q9P232 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
CNTN3Q9P232 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
CNTN3Q9P232 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CNTN3Q9P232 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms