Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
FOXA1P55317 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.43■□□□□ 0.06
FOXA1P55317 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
FOXA1P55317 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA1P55317 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
FOXA1P55317 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
FOXA1P55317 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA1P55317 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.43■□□□□ 0.06
FOXA1P55317 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 MIR346-201ENST00000362234 95 ntBASIC15.43■□□□□ 0.06
FOXA1P55317 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA1P55317 FAM220BP-201ENST00000377689 816 ntBASIC15.43■□□□□ 0.06
FOXA1P55317 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA1P55317 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.43■□□□□ 0.06
FOXA1P55317 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
FOXA1P55317 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.43■□□□□ 0.06
FOXA1P55317 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.43■□□□□ 0.06
FOXA1P55317 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA1P55317 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.43■□□□□ 0.06
FOXA1P55317 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.43■□□□□ 0.06
FOXA1P55317 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.43■□□□□ 0.06
FOXA1P55317 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.43■□□□□ 0.06
FOXA1P55317 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 CYP4F24P-201ENST00000586049 1580 ntBASIC15.43■□□□□ 0.06
FOXA1P55317 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA1P55317 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA1P55317 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
FOXA1P55317 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
FOXA1P55317 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
FOXA1P55317 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.43■□□□□ 0.06
FOXA1P55317 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
FOXA1P55317 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXA1P55317 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
FOXA1P55317 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
FOXA1P55317 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
FOXA1P55317 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.42■□□□□ 0.06
FOXA1P55317 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXA1P55317 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.42■□□□□ 0.06
FOXA1P55317 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.42■□□□□ 0.06
FOXA1P55317 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXA1P55317 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXA1P55317 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXA1P55317 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
FOXA1P55317 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXA1P55317 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
FOXA1P55317 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
FOXA1P55317 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.42■□□□□ 0.06
FOXA1P55317 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXA1P55317 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXA1P55317 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
FOXA1P55317 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXA1P55317 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
FOXA1P55317 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.41■□□□□ 0.06
FOXA1P55317 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 AL136379.1-201ENST00000623471 2642 ntBASIC15.41■□□□□ 0.06
FOXA1P55317 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
FOXA1P55317 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXA1P55317 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms