Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC9.66□□□□□ -0.86
APOBP04114 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC9.66□□□□□ -0.86
APOBP04114 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC9.66□□□□□ -0.86
APOBP04114 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC9.66□□□□□ -0.86
APOBP04114 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC9.66□□□□□ -0.86
APOBP04114 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC9.66□□□□□ -0.86
APOBP04114 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC9.66□□□□□ -0.86
APOBP04114 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC9.66□□□□□ -0.86
APOBP04114 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC9.66□□□□□ -0.86
APOBP04114 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC9.66□□□□□ -0.86
APOBP04114 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC9.66□□□□□ -0.86
APOBP04114 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC9.66□□□□□ -0.86
APOBP04114 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC9.66□□□□□ -0.86
APOBP04114 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC9.66□□□□□ -0.86
APOBP04114 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 AC098935.1-201ENST00000446057 611 ntBASIC9.66□□□□□ -0.86
APOBP04114 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC9.66□□□□□ -0.86
APOBP04114 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC9.66□□□□□ -0.86
APOBP04114 AC242376.1-201ENST00000559033 726 ntBASIC9.66□□□□□ -0.86
APOBP04114 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC9.66□□□□□ -0.86
APOBP04114 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC9.66□□□□□ -0.86
APOBP04114 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC9.66□□□□□ -0.86
APOBP04114 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
APOBP04114 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC9.66□□□□□ -0.86
APOBP04114 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC9.66□□□□□ -0.86
APOBP04114 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC9.66□□□□□ -0.86
APOBP04114 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC9.66□□□□□ -0.86
APOBP04114 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
APOBP04114 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC9.66□□□□□ -0.86
APOBP04114 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC9.66□□□□□ -0.86
APOBP04114 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC9.66□□□□□ -0.86
APOBP04114 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC9.66□□□□□ -0.86
APOBP04114 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC9.65□□□□□ -0.86
APOBP04114 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC9.65□□□□□ -0.86
APOBP04114 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC9.65□□□□□ -0.86
APOBP04114 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC9.65□□□□□ -0.86
APOBP04114 NDUFS6P1-201ENST00000485187 316 ntBASIC9.65□□□□□ -0.86
APOBP04114 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC9.65□□□□□ -0.86
APOBP04114 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC9.65□□□□□ -0.86
APOBP04114 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC9.65□□□□□ -0.86
APOBP04114 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC9.65□□□□□ -0.86
APOBP04114 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC9.65□□□□□ -0.86
APOBP04114 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 ALOX12P2-203ENST00000570921 1945 ntBASIC9.65□□□□□ -0.86
APOBP04114 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC9.65□□□□□ -0.86
APOBP04114 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC9.65□□□□□ -0.86
APOBP04114 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC9.65□□□□□ -0.86
APOBP04114 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 CLUHP2-201ENST00000426660 1303 ntBASIC9.65□□□□□ -0.86
APOBP04114 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 SLC16A6P1-201ENST00000413214 1059 ntBASIC9.65□□□□□ -0.86
APOBP04114 AC097065.1-201ENST00000425737 517 ntBASIC9.65□□□□□ -0.86
APOBP04114 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC9.65□□□□□ -0.86
APOBP04114 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.86
APOBP04114 SAMD11P1-201ENST00000571429 661 ntBASIC9.65□□□□□ -0.86
APOBP04114 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC9.65□□□□□ -0.86
APOBP04114 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC9.65□□□□□ -0.86
APOBP04114 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.86
APOBP04114 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC9.65□□□□□ -0.86
APOBP04114 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC9.65□□□□□ -0.86
APOBP04114 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
APOBP04114 POM121L8P-201ENST00000417732 1281 ntBASIC9.65□□□□□ -0.86
APOBP04114 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC9.65□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms